| Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity FA Ran, PD Hsu, CY Lin, JS Gootenberg, S Konermann, AE Trevino, ... Cell 154 (6), 1380-1389, 2013 | 3564 | 2013 |
| Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex S Konermann, MD Brigham, AE Trevino, J Joung, OO Abudayyeh, ... Nature 517 (7536), 583-588, 2015 | 2230 | 2015 |
| An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues MR Corces, AE Trevino, EG Hamilton, PG Greenside, ... Nature methods 14 (10), 959-962, 2017 | 1050 | 2017 |
| Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells X Wu, DA Scott, AJ Kriz, AC Chiu, PD Hsu, DB Dadon, AW Cheng, ... Nature biotechnology 32 (7), 670-676, 2014 | 957 | 2014 |
| Optical control of mammalian endogenous transcription and epigenetic states S Konermann, MD Brigham, AE Trevino, PD Hsu, M Heidenreich, L Cong, ... Nature 500 (7463), 472-476, 2013 | 929 | 2013 |
| Chromatin accessibility dynamics in a model of human forebrain development AE Trevino, N Sinnott-Armstrong, J Andersen, SJ Yoon, N Huber, ... Science 367 (6476), eaay1645, 2020 | 112 | 2020 |
| Genome editing using Cas9 nickases AE Trevino, F Zhang Methods in enzymology 546, 161-174, 2014 | 98 | 2014 |
| Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution AE Trevino, F Müller, J Andersen, L Sundaram, A Kathiria, A Shcherbina, ... Cell 184 (19), 5053-5069. e23, 2021 | 55 | 2021 |
| Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements J Tycko, M Wainberg, GK Marinov, O Ursu, GT Hess, BK Ego, A Li, ... Nature communications 10 (1), 1-14, 2019 | 55 | 2019 |
| Diverse lncRNA mechanisms in brain development and disease CE Ang, AE Trevino, HY Chang Current opinion in genetics & development 65, 42-46, 2020 | 24 | 2020 |
| Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum GK Marinov, AE Trevino, T Xiang, A Kundaje, AR Grossman, ... Nature genetics 53 (5), 613-617, 2021 | 15 | 2021 |
| Functional screening with optimized functional CRISPR-Cas systems F Zhang, S Konermann, MD Brigham, A Trevino US Patent 11,001,829, 2021 | 13 | 2021 |
| Systems, methods and compositions for sequence manipulation with optimized functional CRISPR-Cas systems S Konermann, A Trevino, M Brigham, RAN Fei, P Hsu, C Lin, O Nureki, ... | 12 | 2015 |
| Omni-ATAC-seq: improved ATAC-seq protocol MR Corces, MR Mumbach, WJ Greenleaf, TJ Montine, PA Khavari, ... | 8 | 2017 |
| Transcription-dependent domain-scale 3D genome organization in dinoflagellates GK Marinov, AE Trevino, T Xiang, A Kundaje, AR Grossman, ... BioRxiv, 2020 | 6 | 2020 |
| Identification and mitigation of pervasive off-target activity in CRISPR-Cas9 screens for essential non-coding elements J Tycko, M Wainberg, GK Marinov, O Ursu, GT Hess, BK Ego, A Li, ... bioRxiv, 520569, 2019 | 2 | 2019 |
| SPACE-GM: geometric deep learning of disease-associated microenvironments from multiplex spatial protein profiles. Z Wu, AE Trevino, E Wu, K Swanson, HJ Kim, HB D'Angio, R Preska, ... bioRxiv, 2022 | 1 | 2022 |
| 7-UP: generating in silico CODEX from a small set of immunofluorescence markers E Wu, AE Trevino, Z Wu, K Swanson, HJ Kim, HB D’Angio, R Preska, ... bioRxiv, 2022 | | 2022 |
| Direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping (CasKAS) GK Marinov, SH Kim, ST Bagdatli, AE Trevino, J Tycko, T Wu, L Bintu, ... bioRxiv, 2021 | | 2021 |
| Systems, methods and compositions for sequence manipulation with optimized functional crispr-cas systems S Konermann, A Trevino, M Brigham, RAN Fei, P Hsu, C Lin, O Nureki, ... US Patent App. 16/592,744, 2020 | | 2020 |
Silvana KonermannStanford University, Howard Hughes Medical InstituteVerified email at stanford.edu
