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Alexandro E Trevino
Alexandro E Trevino
Verified email at stanford.edu
Title
Cited by
Cited by
Year
Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity
FA Ran, PD Hsu, CY Lin, JS Gootenberg, S Konermann, AE Trevino, ...
Cell 154 (6), 1380-1389, 2013
35642013
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
S Konermann, MD Brigham, AE Trevino, J Joung, OO Abudayyeh, ...
Nature 517 (7536), 583-588, 2015
22302015
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
MR Corces, AE Trevino, EG Hamilton, PG Greenside, ...
Nature methods 14 (10), 959-962, 2017
10502017
Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells
X Wu, DA Scott, AJ Kriz, AC Chiu, PD Hsu, DB Dadon, AW Cheng, ...
Nature biotechnology 32 (7), 670-676, 2014
9572014
Optical control of mammalian endogenous transcription and epigenetic states
S Konermann, MD Brigham, AE Trevino, PD Hsu, M Heidenreich, L Cong, ...
Nature 500 (7463), 472-476, 2013
9292013
Chromatin accessibility dynamics in a model of human forebrain development
AE Trevino, N Sinnott-Armstrong, J Andersen, SJ Yoon, N Huber, ...
Science 367 (6476), eaay1645, 2020
1122020
Genome editing using Cas9 nickases
AE Trevino, F Zhang
Methods in enzymology 546, 161-174, 2014
982014
Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution
AE Trevino, F Müller, J Andersen, L Sundaram, A Kathiria, A Shcherbina, ...
Cell 184 (19), 5053-5069. e23, 2021
552021
Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements
J Tycko, M Wainberg, GK Marinov, O Ursu, GT Hess, BK Ego, A Li, ...
Nature communications 10 (1), 1-14, 2019
552019
Diverse lncRNA mechanisms in brain development and disease
CE Ang, AE Trevino, HY Chang
Current opinion in genetics & development 65, 42-46, 2020
242020
Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum
GK Marinov, AE Trevino, T Xiang, A Kundaje, AR Grossman, ...
Nature genetics 53 (5), 613-617, 2021
152021
Functional screening with optimized functional CRISPR-Cas systems
F Zhang, S Konermann, MD Brigham, A Trevino
US Patent 11,001,829, 2021
132021
Systems, methods and compositions for sequence manipulation with optimized functional CRISPR-Cas systems
S Konermann, A Trevino, M Brigham, RAN Fei, P Hsu, C Lin, O Nureki, ...
122015
Omni-ATAC-seq: improved ATAC-seq protocol
MR Corces, MR Mumbach, WJ Greenleaf, TJ Montine, PA Khavari, ...
82017
Transcription-dependent domain-scale 3D genome organization in dinoflagellates
GK Marinov, AE Trevino, T Xiang, A Kundaje, AR Grossman, ...
BioRxiv, 2020
62020
Identification and mitigation of pervasive off-target activity in CRISPR-Cas9 screens for essential non-coding elements
J Tycko, M Wainberg, GK Marinov, O Ursu, GT Hess, BK Ego, A Li, ...
bioRxiv, 520569, 2019
22019
SPACE-GM: geometric deep learning of disease-associated microenvironments from multiplex spatial protein profiles.
Z Wu, AE Trevino, E Wu, K Swanson, HJ Kim, HB D'Angio, R Preska, ...
bioRxiv, 2022
12022
7-UP: generating in silico CODEX from a small set of immunofluorescence markers
E Wu, AE Trevino, Z Wu, K Swanson, HJ Kim, HB D’Angio, R Preska, ...
bioRxiv, 2022
2022
Direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping (CasKAS)
GK Marinov, SH Kim, ST Bagdatli, AE Trevino, J Tycko, T Wu, L Bintu, ...
bioRxiv, 2021
2021
Systems, methods and compositions for sequence manipulation with optimized functional crispr-cas systems
S Konermann, A Trevino, M Brigham, RAN Fei, P Hsu, C Lin, O Nureki, ...
US Patent App. 16/592,744, 2020
2020
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