| Integrating pathways of Parkinson's disease in a molecular interaction map KA Fujita, M Ostaszewski, Y Matsuoka, S Ghosh, E Glaab, C Trefois, ... Molecular neurobiology 49, 88-102, 2014 | 265 | 2014 |
| A novel network integrating a miRNA-203/SNAI1 feedback loop which regulates epithelial to mesenchymal transition M Moes, A Le Béchec, I Crespo, C Laurini, A Halavatyi, G Vetter, ... PloS one 7 (4), e35440, 2012 | 204 | 2012 |
| Low-dose radiotherapy reverses tumor immune desertification and resistance to immunotherapy FG Herrera, C Ronet, M Ochoa de Olza, D Barras, I Crespo, M Andreatta, ... Cancer discovery 12 (1), 108-133, 2022 | 195 | 2022 |
| Cooperative development of logical modelling standards and tools with CoLoMoTo A Naldi, P Monteiro, C Müssel, TCLM Tools, K Hans A., D Thieffry, ... Bioinformatics, 2015 | 88 | 2015 |
| Myeloid antigen-presenting cell niches sustain antitumor T cells and license PD-1 blockade via CD28 costimulation J Duraiswamy, R Turrini, A Minasyan, D Barras, I Crespo, AJ Grimm, ... Cancer Cell 39 (12), 1623-1642. e20, 2021 | 83 | 2021 |
| Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks I Crespo, TM Perumal, W Jurkowski, A Del Sol BMC systems biology 7, 1-14, 2013 | 56 | 2013 |
| Deciphering the dynamic transcriptional and post-transcriptional networks of macrophages in the healthy heart and after myocardial injury W Walter, L Alonso-Herranz, V Trappetti, I Crespo, M Ibberson, ... Cell reports 23 (2), 622-636, 2018 | 54 | 2018 |
| Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method J Dorier, I Crespo, A Niknejad, R Liechti, M Ebeling, I Xenarios BMC bioinformatics 17, 1-19, 2016 | 52 | 2016 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Members Nucleic acid research, 2015 | 51* | 2015 |
| A General Strategy for Cellular Reprogramming: The Importance of Transcription Factor Cross‐Repression I Crespo, A del Sol Stem Cells, DOI: 10.1002/stem.1473, 2013 | 49 | 2013 |
| Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease I Crespo, K Roomp, W Jurkowski, H Kitano, A del Sol BMC Systems Biology 6 (1), 132, 2012 | 47 | 2012 |
| Fisetin protects against cardiac cell death through reduction of ROS production and caspases activity S Rodius, N de Klein, C Jeanty, H Sánchez-Iranzo, I Crespo, M Ibberson, ... Scientific reports 10 (1), 2896, 2020 | 41 | 2020 |
| Adoptive immunotherapy for treating cancer M Doucey, N Guex, I Crespo, I Xenarios US Patent 10,858,626, 2020 | 34 | 2020 |
| SourceData: a semantic platform for curating and searching figures IXTL Robin Liechti, Nancy George, Lou Götz, Sara El-Gebali, Anastasia ... Nature methods 14, 1021–1022, 2017 | 33 | 2017 |
| Predicting missing expression values in gene regulatory networks using a discrete logic modeling optimization guided by network stable states I Crespo, A Krishna, A Le Bechec, A del Sol Nucleic acids research 41 (1), e8-e8, 2013 | 33 | 2013 |
| Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics MN Loviglio, CR Beck, JJ White, M Leleu, T Harel, N Guex, A Niknejad, ... Genome medicine 8, 1-15, 2016 | 31 | 2016 |
| Analysis of the dynamic co-expression network of heart regeneration in the zebrafish S Rodius, A Fournier, L Götz, R Liechti, I Crespo, S Merz, PV Nazarov, ... Scientific reports 6 (1), 26822, 2016 | 29 | 2016 |
| Angiogenic activity of breast cancer patients’ monocytes reverted by combined use of systems modeling and experimental approaches N Guex, I Crespo, S Bron, A Ifticene-Treboux, E Faes-van’t Hull, ... PLoS computational biology 11 (3), e1004050, 2015 | 28 | 2015 |
| Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes Y Gu, GH Liu, N Plongthongkum, C Benner, F Yi, J Qu, K Suzuki, J Yang, ... Protein & Cell, 2013 | 28 | 2013 |
| Discrete logic modelling optimization to contextualize prior knowledge networks using PRUNET A Rodriguez, I Crespo, A Fournier, A del Sol PloS one 10 (6), e0127216, 2015 | 23 | 2015 |
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