| Inexpensive multiplexed library preparation for megabase-sized genomes M Baym, S Kryazhimskiy, TD Lieberman, H Chung, MM Desai, R Kishony PLoS One 10 (5), e0128036, 2015 | 583 | 2015 |
| Spatiotemporal microbial evolution on antibiotic landscapes M Baym, TD Lieberman, ED Kelsic, R Chait, R Gross, I Yelin, R Kishony Science 353 (6304), 1147-1151, 2016 | 445 | 2016 |
| Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes TD Lieberman, JB Michel, M Aingaran, G Potter-Bynoe, D Roux, ... Nature genetics 43 (12), 1275-1280, 2011 | 403 | 2011 |
| Genetic variation of a bacterial pathogen within individuals with cystic fibrosis provides a record of selective pressures TD Lieberman, KB Flett, I Yelin, TR Martin, AJ McAdam, GP Priebe, ... Nature genetics 46 (1), 82-87, 2014 | 260 | 2014 |
| Alternating antibiotic treatments constrain evolutionary paths to multidrug resistance S Kim, TD Lieberman, R Kishony Proceedings of the National Academy of Sciences 111 (40), 14494-14499, 2014 | 250 | 2014 |
| Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events JE Lemieux, KJ Siddle, BM Shaw, C Loreth, SF Schaffner, ... Science 371 (6529), eabe3261, 2021 | 249* | 2021 |
| Adaptive evolution within gut microbiomes of healthy people S Zhao, TD Lieberman, M Poyet, KM Kauffman, SM Gibbons, M Groussin, ... Cell host & microbe 25 (5), 656-667. e8, 2019 | 246 | 2019 |
| A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research M Poyet, M Groussin, SM Gibbons, J Avila-Pacheco, X Jiang, SM Kearney, ... Nature medicine 25 (9), 1442-1452, 2019 | 199 | 2019 |
| Genomic diversity in autopsy samples reveals within-host dissemination of HIV-associated Mycobacterium tuberculosis TD Lieberman, D Wilson, R Misra, LL Xiong, P Moodley, T Cohen, ... Nature medicine 22 (12), 1470-1474, 2016 | 107 | 2016 |
| Towards a synthetic chloroplast CM Agapakis, H Niederholtmeyer, RR Noche, TD Lieberman, ... PloS one 6 (4), e18877, 2011 | 82 | 2011 |
| Targeting pan-resistant bacteria with antibodies to a broadly conserved surface polysaccharide expressed during infection D Skurnik, MR Davis Jr, D Benedetti, KL Moravec, C Cywes-Bentley, ... The Journal of infectious diseases 205 (11), 1709-1718, 2012 | 58 | 2012 |
| Global and local selection acting on the pathogen Stenotrophomonas maltophilia in the human lung H Chung, TD Lieberman, SO Vargas, KB Flett, AJ McAdam, GP Priebe, ... Nature communications 8 (1), 14078, 2017 | 49 | 2017 |
| Compounds that select against the tetracycline-resistance efflux pump LK Stone, M Baym, TD Lieberman, R Chait, J Clardy, R Kishony Nature chemical biology 12 (11), 902-904, 2016 | 41 | 2016 |
| An objective function exploiting suboptimal solutions in metabolic networks EH Wintermute, TD Lieberman, PA Silver BMC systems biology 7, 1-16, 2013 | 31 | 2013 |
| Anatomy promotes neutral coexistence of strains in the human skin microbiome A Conwill, AC Kuan, R Damerla, AJ Poret, JS Baker, AD Tripp, EJ Alm, ... Cell Host & Microbe 30 (2), 171-182. e7, 2022 | 30 | 2022 |
| A hybrid drug limits resistance by evading the action of the multiple antibiotic resistance pathway KK Wang, LK Stone, TD Lieberman, M Shavit, T Baasov, R Kishony Molecular biology and evolution 33 (2), 492-500, 2016 | 25 | 2016 |
| The skin microbiome of patients with atopic dermatitis normalizes gradually during treatment VD Khadka, FM Key, C Romo-González, A Martínez-Gayosso, ... Frontiers in Cellular and Infection Microbiology, 910, 2021 | 17 | 2021 |
| On-person adaptive evolution of Staphylococcus aureus during treatment for atopic dermatitis FM Key, VD Khadka, C Romo-González, KJ Blake, L Deng, TC Lynn, ... BioRxiv, 2021 | 8 | 2021 |
| Seven billion microcosms: evolution within human microbiomes TD Lieberman Msystems 3 (2), e00171-17, 2018 | 6 | 2018 |
| No evidence that synonymous mutations in yeast genes are mostly deleterious L Kruglyak, A Beyer, JS Bloom, J Grossbach, TD Lieberman, CP Mancuso, ... bioRxiv, 2022.07. 14.500130, 2022 | 5 | 2022 |
Roy KishonyVerified email at hms.harvard.edu
