Vasilis J. Promponas

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Christos Α. OuzounisAUTH, Thessalonica, Greece • CERTH, Thessalonica, GreeceVerified email at csd.auth.gr
STAVROS HAMODRAKASVerified email at biol.uoa.gr
Ioannis IliopoulosAssociate Professor Medical School University of CreteVerified email at med.uoc.gr
Claude PasquierUniversité Côte d’Azur, CNRS, I3S, FranceVerified email at univ-cotedazur.fr
Miguel AndradeJohannes-Gutenberg University in MainzVerified email at uni-mainz.de
Pablo MierUniversity of MainzVerified email at uni-mainz.de
Ioannis P. NezisProfessor of Cell Biology, University of WarwickVerified email at warwick.ac.uk
Sophia TsokaKing's College LondonVerified email at kcl.ac.uk
Nikolas PapanikolaouUniversity of CreteVerified email at uoc.gr
Aleksandra GrucaAssociate Professor, Silesian University of TechnologyVerified email at polsl.pl
Marcin GrynbergInstitute of Biochemistry and BiophysicsVerified email at ibb.waw.pl
Theocharis (Theo) TheocharidesAssociate Professor, ECE , KIOS Research and Innovation Center of Excellence, University of CyprusVerified email at ucy.ac.cy
Agathoklis PapadopoulosVerified email at signumpath.com
Chris ChristodoulouProfessor, Department of Computer Science, University of CyprusVerified email at cs.ucy.ac.cy
Constantinos S. PattichisProf. of Computer Science, University of Cyprus & HealthXR Group, CYENS Centre of Excellence, CYPRUSVerified email at ucy.ac.cy
Silvio TosattoFull Professor of Bioinformatics, Department of Biomedical Sciences, University of PaduaVerified email at unipd.it
Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Anton EnrightGroup Leader, Department of Pathology, University of CambridgeVerified email at cam.ac.uk
Dosztanyi ZsuzsannaEötvös Loránd UniversityVerified email at ttk.elte.hu
Evangelos PafilisResearcher C, Hellenic Center Marine Research (HCMR)Verified email at hcmr.gr

Vasilis J. Promponas

Assοciate Professor in Bioinformatics, University of Cyprus, Nicosia, Cyprus

Verified email at ucy.ac.cy

Bioinformatics Computational Biology


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Guidelines for the use and interpretation of assays for monitoring autophagy DJ Klionsky, K Abdelmohsen, A Abe, MJ Abedin, H Abeliovich, ... Autophagy 12 (1), 1-222, 2016	9602*	2016
A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm C Pasquier, VJ Promponas, GA Palaios, JS Hamodrakas, SJ Hamodrakas Protein Engineering 12 (5), 381-385, 1999	208	1999
DisProt: intrinsic protein disorder annotation in 2020 A Hatos, B Hajdu-Soltész, AM Monzon, N Palopoli, L Álvarez, ... Nucleic acids research 48 (D1), D269-D276, 2020	202	2020
CAST: an iterative algorithm for the complexity analysis of sequence tracts VJ Promponas, AJ Enright, S Tsoka, DP Kreil, C Leroy, S Hamodrakas, ... Bioinformatics 16 (10), 915-922, 2000	202	2000
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases OK Tørresen, B Star, P Mier, MA Andrade-Navarro, A Bateman, P Jarnot, ... Nucleic acids research 47 (21), 10994-11006, 2019	182	2019
iLIR: a web resource for prediction of Atg8-family interacting proteins I Kalvari, S Tsompanis, NC Mulakkal, R Osgood, T Johansen, IP Nezis, ... Autophagy 10 (5), 2014	182	2014
Critical assessment of protein intrinsic disorder prediction M Necci, D Piovesan, SCE Tosatto Nature methods 18 (5), 472-481, 2021	133	2021
iLIR database: A web resource for LIR motif-containing proteins in eukaryotes AC Jacomin, S Samavedam, V Promponas, IP Nezis Autophagy 12 (10), 1945-1953, 2016	130	2016
Evaluation of annotation strategies using an entire genome sequence I Iliopoulos, S Tsoka, MA Andrade, AJ Enright, M Carroll, P Poullet, ... Bioinformatics 19 (6), 717-726, 2003	114	2003
Territorial dynamics of Mexican Ant‐thrushes Formicarius moniliger revealed by individual recognition of their songs ANG Kirschel, ML Cody, ZT Harlow, VJ Promponas, EE Vallejo, CE Taylor Ibis 153 (2), 255-268, 2011	85	2011
Guidelines for the use and interpretation of assays for monitoring autophagy 1 D Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif, A Abdoli, S Abel, ... Autophagy 17 (1), 1-382, 2021	81	2021
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation F Quaglia, B Mészáros, E Salladini, A Hatos, R Pancsa, LB Chemes, ... Nucleic Acids Research 50 (D1), D480-D487, 2022	73	2022
Disentangling the complexity of low complexity proteins P Mier, L Paladin, S Tamana, S Petrosian, B Hajdu-Soltész, A Urbanek, ... Briefings in Bioinformatics 21 (2), 458-472, 2020	69	2020
PRED-GPCR: GPCR recognition and family classification server PK Papasaikas, PG Bagos, ZI Litou, VJ Promponas, SJ Hamodrakas Nucleic acids research 32 (suppl_2), W380-W382, 2004	62	2004
PRED‐CLASS: Cascading neural networks for generalized protein classification and genome‐wide applications C Pasquier, VJ Promponas, SJ Hamodrakas Proteins: Structure, Function, and Bioinformatics 44 (3), 361-369, 2001	51	2001
Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved C Ntountoumi, P Vlastaridis, D Mossialos, C Stathopoulos, I Iliopoulos, ... Nucleic Acids Research 47 (19), 9998-10009, 2019	48	2019
Statistical and machine learning techniques in human microbiome studies: contemporary challenges and solutions I Moreno-Indias, L Lahti, M Nedyalkova, I Elbere, G Roshchupkin, ... Frontiers in microbiology, 277, 2021	45	2021
Clustering of biological time series by cepstral coefficients based distances A Savvides, VJ Promponas, K Fokianos Pattern Recognition 41 (7), 2398-2412, 2008	45	2008
Annotation inconsistencies beyond sequence similarity-based function prediction–phylogeny and genome structure VJ Promponas, I Iliopoulos, CA Ouzounis Standards in genomic sciences 10 (1), 108, 2015	39	2015
Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence S Panayidou, K Georgiades, T Christofi, S Tamana, VJ Promponas, ... Scientific Reports 10 (1), 9505, 2020	30	2020

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