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Vasilis J. Promponas
Vasilis J. Promponas
Assοciate Professor in Bioinformatics, University of Cyprus, Nicosia, Cyprus
Verified email at ucy.ac.cy
Title
Cited by
Cited by
Year
Guidelines for the use and interpretation of assays for monitoring autophagy
DJ Klionsky, K Abdelmohsen, A Abe, MJ Abedin, H Abeliovich, ...
Autophagy 12 (1), 1-222, 2016
13210*2016
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
OK Třrresen, B Star, P Mier, MA Andrade-Navarro, A Bateman, P Jarnot, ...
Nucleic acids research 47 (21), 10994-11006, 2019
2582019
DisProt: intrinsic protein disorder annotation in 2020
A Hatos, B Hajdu-Soltész, AM Monzon, N Palopoli, L Álvarez, ...
Nucleic acids research 48 (D1), D269-D276, 2020
2432020
Critical assessment of protein intrinsic disorder prediction
M Necci, D Piovesan, SCE Tosatto
Nature methods 18 (5), 472-481, 2021
2152021
A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm
C Pasquier, VJ Promponas, GA Palaios, JS Hamodrakas, SJ Hamodrakas
Protein Engineering 12 (5), 381-385, 1999
2131999
CAST: an iterative algorithm for the complexity analysis of sequence tracts
VJ Promponas, AJ Enright, S Tsoka, DP Kreil, C Leroy, S Hamodrakas, ...
Bioinformatics 16 (10), 915-922, 2000
2102000
iLIR: a web resource for prediction of Atg8-family interacting proteins
I Kalvari, S Tsompanis, NC Mulakkal, R Osgood, T Johansen, IP Nezis, ...
Autophagy 10 (5), 2014
2052014
iLIR database: A web resource for LIR motif-containing proteins in eukaryotes
AC Jacomin, S Samavedam, V Promponas, IP Nezis
Autophagy 12 (10), 1945-1953, 2016
1592016
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
F Quaglia, B Mészáros, E Salladini, A Hatos, R Pancsa, LB Chemes, ...
Nucleic acids research 50 (D1), D480-D487, 2022
1302022
Evaluation of annotation strategies using an entire genome sequence
I Iliopoulos, S Tsoka, MA Andrade, AJ Enright, M Carroll, P Poullet, ...
Bioinformatics 19 (6), 717-726, 2003
1202003
Territorial dynamics of Mexican Ant‐thrushes Formicarius moniliger revealed by individual recognition of their songs
ANG Kirschel, ML Cody, ZT Harlow, VJ Promponas, EE Vallejo, CE Taylor
Ibis 153 (2), 255-268, 2011
872011
Disentangling the complexity of low complexity proteins
P Mier, L Paladin, S Tamana, S Petrosian, B Hajdu-Soltész, A Urbanek, ...
Briefings in Bioinformatics 21 (2), 458-472, 2020
782020
PRED-GPCR: GPCR recognition and family classification server
PK Papasaikas, PG Bagos, ZI Litou, VJ Promponas, SJ Hamodrakas
Nucleic acids research 32 (suppl_2), W380-W382, 2004
632004
Statistical and machine learning techniques in human microbiome studies: contemporary challenges and solutions
I Moreno-Indias, L Lahti, M Nedyalkova, I Elbere, G Roshchupkin, ...
Frontiers in microbiology 12, 635781, 2021
592021
Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved
C Ntountoumi, P Vlastaridis, D Mossialos, C Stathopoulos, I Iliopoulos, ...
Nucleic acids research 47 (19), 9998-10009, 2019
522019
PRED‐CLASS: Cascading neural networks for generalized protein classification and genome‐wide applications
C Pasquier, VJ Promponas, SJ Hamodrakas
Proteins: Structure, Function, and Bioinformatics 44 (3), 361-369, 2001
522001
Annotation inconsistencies beyond sequence similarity-based function prediction–phylogeny and genome structure
VJ Promponas, I Iliopoulos, CA Ouzounis
Standards in genomic sciences 10 (1), 108, 2015
462015
Clustering of biological time series by cepstral coefficients based distances
A Savvides, VJ Promponas, K Fokianos
Pattern Recognition 41 (7), 2398-2412, 2008
462008
Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence
S Panayidou, K Georgiades, T Christofi, S Tamana, VJ Promponas, ...
Scientific Reports 10 (1), 9505, 2020
412020
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins
P Jarnot, J Ziemska-Legiecka, L Dobson, M Merski, P Mier, ...
Nucleic acids research 48 (W1), W77-W84, 2020
362020
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