Mohammad Hossein Karimi-Jafari

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Rohoullah FirouziAssociate Professor, Chemistry and Chemical Engineering Research Center of IranVerified email at ccerci.ac.ir
Mitra AshouriVerified email at ut.ac.ir
Ali MaghariProfessor of Physical Chemistry, University of TehranVerified email at ut.ac.ir
Ali Akbar SabouryDistinguished Professor of Biophysical Chemistry, University of TehranVerified email at ut.ac.ir
Ali Akbar Moosavi-MovahediUniversity of TehranVerified email at ut.ac.ir
Najmeh SalehiSchool of Biological Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran.Verified email at ut.ac.ir
Razieh KaramzadehKarolinska Institute, Royan Institute, University of TehranVerified email at ki.se
Mehdi TotonchiGenetics & Stem cell Departments, Royan InstituteVerified email at royaninstitute.org
Atiyeh GhasemiInstitute of Biochemistry and Biophysics, University of TehranVerified email at ut.ac.ir
Ghasem Hosseini SalekdehMacquarie UniversityVerified email at mq.edu.au
Yazdan AsgariCESP, Team "Exposome and Heredity"Verified email at inserm.fr
Jahan B. Ghasemi (ORCID:0000-0002...University of TehranVerified email at ut.ac.ir
Saeed YousefinejadAssociate Professor of Analytical Chemistry, Shiraz University of Medical Sciences, ShirazVerified email at sums.ac.ir
Behnam Rasti (ORCID iD: 0000-0002-...Assistant Professor, Islamic Azad University, Lahijan BranchVerified email at iau.ac.ir
Hamidreza ChitsazAutoX TechnologiesVerified email at algorithmicslab.org
Ali Sharifi-ZarchiAssistant Prof. of Bioinformatics and Artificial Intelligence, Sharif University of TechnologyVerified email at sharif.ir
Atefeh PoursoleimanInstitute of Biochemistry and Biophysics,University of TehranVerified email at ut.ac.ir
Osama K. Abou-ZiedProfessor of Chemistry, Sultan Qaboos UniversityVerified email at squ.edu.om
Anahita KhammariVerified email at ut.ac.ir
Mehdi KhoobiProfessor of Chemistry, Faculty of Pharmacy, Tehran University of Medical SciencesVerified email at tums.ac.ir

Mohammad Hossein Karimi-Jafari

Associate Professor of Bioinformatics, University of Tehran

Verified email at ut.ac.ir

Biomolecular Modeling


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Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase R Karamzadeh, MH Karimi-Jafari, A Sharifi-Zarchi, H Chitsaz, ... Scientific Reports 7 (1), 3666, 2017	44	2017
Insights into the molecular interaction between two polyoxygenated cinnamoylcoumarin derivatives and human serum albumin A Khammari, AA Saboury, MH Karimi-Jafari, M Khoobi, A Ghasemi, ... Physical Chemistry Chemical Physics 19 (15), 10099-10115, 2017	36	2017
An improved ab initio potential energy surface for N2–N2 MHK Jafari, A Maghari, S Shahbazian Chemical physics 314 (1-3), 249-262, 2005	34	2005
iMM1865: A new reconstruction of mouse genome-scale metabolic model S Khodaee, Y Asgari, M Totonchi, MH Karimi-Jafari Scientific Reports 10 (1), 6177, 2020	26	2020
Metastatic triple negative breast cancer adapts its metabolism to destination tissues while retaining key metabolic signatures F Roshanzamir, JL Robinson, D Cook, MH Karimi-Jafari, J Nielsen Proceedings of the National Academy of Sciences 119 (35), e2205456119, 2022	23	2022
Prediction of antimicrobial peptides toxicity based on their physico-chemical properties using machine learning techniques H Khabbaz, MH Karimi-Jafari, AA Saboury, B BabaAli BMC bioinformatics 22 (1), 1-11, 2021	20	2021
Ensemble learning from ensemble docking: Revisiting the optimum ensemble size problem S Mohammadi, Z Narimani, M Ashouri, R Firouzi, MH Karimi‐Jafari Scientific Reports 12 (1), 410, 2022	18	2022
Identification of a missense variant in CLDN2 in obstructive azoospermia M Askari, R Karamzadeh, N Ansari-Pour, MH Karimi-Jafari, N Almadani, ... Journal of human genetics 64 (10), 1023-1032, 2019	18	2019
An Ab Initio Intermolecular Potential Energy Surface for the F2 Dimer MH Karimi-Jafari, A Maghari The Journal of Physical Chemistry A 111 (27), 6077-6083, 2007	18	2007
Polymyxins interaction to the human serum albumin: A thermodynamic and computational study A Poursoleiman, MH Karimi-Jafari, Z Zolmajd-Haghighi, M Bagheri, ... Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 217, 155-163, 2019	17	2019
Quantitative Characterization of the Interaction Space of the Mammalian Carbonic Anhydrase Isoforms I, II, VII, IX, XII, and XIV and their Inhibitors, Using the … B Rasti, MH Karimi‐Jafari, JB Ghasemi Chemical biology & drug design 88 (3), 341-353, 2016	16	2016
Integration and Gene Co-Expression Network Analysis of scRNA-seq Transcriptomes Reveal Heterogeneity and Key Functional Genes in Human Spermatogenesis N Salehi, MH Karimi-Jafari, M Totonchi, A Amiri-Yekta Scientific Reports, 2021	15	2021
Coping with the anisotropy in the analytical representation of an ab initio potential energy surface for the Cl2 dimer MH Karimi-Jafari, M Ashouri, A Yeganeh-Jabri Phys. Chem. Chem. Phys. 11 (27), 5561-5568, 2009	13	2009
ET‐score: Improving Protein‐ligand Binding Affinity Prediction Based on Distance‐weighted Interatomic Contact Features Using Extremely Randomized Trees Algorithm M Rayka, MH Karimi‐Jafari, R Firouzi Molecular Informatics 40 (8), 2060084, 2021	12	2021
Using the Semiempirical Quantum Mechanics in Improving the Molecular Docking: A Case Study with CDK2 S Bagheri, H Behnejad, R Firouzi, MH Karimi‐Jafari Molecular Informatics 39 (9), 2000036, 2020	11	2020
Histidine substitution in the most flexible fragments of firefly luciferase modifies its thermal stability M Rahban, N Salehi, AA Saboury, S Hosseinkhani, MH Karimi-Jafari, ... Archives of biochemistry and biophysics 629, 8-18, 2017	11	2017
Proteochemometric Modeling of the Interaction Space of Carbonic Anhydrase and its Inhibitors: An Assessment of Structure‐based and Sequence‐based Descriptors B Rasti, M Namazi, MH Karimi‐Jafari, JB Ghasemi Molecular Informatics 36 (4), 1600102, 2017	11	2017
Hersintuzumab: A novel humanized anti-HER2 monoclonal antibody induces potent tumor growth inhibition MM Amiri, F Golsaz-Shirazi, T Soltantoyeh, R Hosseini-Ghatar, ... Investigational new drugs 36 (2), 171-186, 2018	10	2018
Intermolecular Potential Energy Surface of the N2− CO Dimer: Ab Initio Investigation and Analytical Representation MH Karimi-Jafari, A Maghari, A Farjamnia The Journal of Physical Chemistry A 115 (6), 1143-1151, 2011	10	2011
Quantifying the anisotropy of intermolecular potential energy surfaces: a critical assessment of available N2–N2 potentials MH Karimi-Jafari, M Ashouri Phys. Chem. Chem. Phys. 13 (20), 9887-9894, 2011	9	2011

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