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Claire Duvallet
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
7391*2019
Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
C Duvallet, SM Gibbons, T Gurry, RA Irizarry, EJ Alm
Nature communications 8 (1), 1-10, 2017
6232017
SARS-CoV-2 titers in wastewater are higher than expected from clinically confirmed cases
F Wu, J Zhang, A Xiao, X Gu, WL Lee, F Armas, K Kauffman, W Hanage, ...
Msystems 5 (4), e00614-20, 2020
6122020
SARS-CoV-2 RNA concentrations in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases
F Wu, A Xiao, J Zhang, K Moniz, N Endo, F Armas, R Bonneau, MA Brown, ...
Science of The Total Environment 805, 150121, 2022
1732022
A practical guide to methods controlling false discoveries in computational biology
K Korthauer, PK Kimes, C Duvallet, A Reyes, A Subramanian, M Teng, ...
Genome biology 20 (1), 1-21, 2019
1312019
Correcting for batch effects in case-control microbiome studies
SM Gibbons, C Duvallet, EJ Alm
PLoS computational biology 14 (4), e1006102, 2018
882018
Wastewater surveillance of SARS-CoV-2 across 40 US states from February to June 2020
F Wu, A Xiao, J Zhang, K Moniz, N Endo, F Armas, M Bushman, PR Chai, ...
Water research 202, 117400, 2021
73*2021
SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases. mSystems, 5 (4)
F Wu, J Zhang, A Xiao, X Gu, WL Lee, F Armas, K Kauffman, W Hanage, ...
622020
Quantitative SARS-CoV-2 alpha variant B. 1.1. 7 tracking in wastewater by allele-specific RT-qPCR
WL Lee, M Imakaev, F Armas, KA McElroy, X Gu, C Duvallet, F Chandra, ...
Environmental Science & Technology Letters 8 (8), 675-682, 2021
48*2021
Making waves: Defining the lead time of wastewater-based epidemiology for COVID-19
SW Olesen, M Imakaev, C Duvallet
Water Research 202, 117433, 2021
332021
Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort
T Gurry, SM Gibbons, LTT Nguyen, SM Kearney, A Ananthakrishnan, ...
Scientific reports 8 (1), 1-13, 2018
322018
Metrics to relate COVID-19 wastewater data to clinical testing dynamics
A Xiao, F Wu, M Bushman, J Zhang, M Imakaev, PR Chai, C Duvallet, ...
Water research 212, 118070, 2022
292022
Framework for rational donor selection in fecal microbiota transplant clinical trials
C Duvallet, C Zellmer, P Panchal, S Budree, M Osman, EJ Alm
PLoS One 14 (10), e0222881, 2019
282019
Peer reviewed: Mapping community opioid exposure through wastewater-based epidemiology as a means to engage pharmacies in harm reduction efforts
C Duvallet, BD Hayes, TB Erickson, PR Chai, M Matus
Preventing Chronic Disease 17, 2020
212020
Standardizing data reporting in the research community to enhance the utility of open data for SARS-CoV-2 wastewater surveillance
JS McClary-Gutierrez, ZT Aanderud, M Al-Faliti, C Duvallet, R Gonzalez, ...
Environmental science: water research & technology 7 (9), 1545-1551, 2021
202021
Rapid assessment of opioid exposure and treatment in cities through robotic collection and chemical analysis of wastewater
N Endo, N Ghaeli, C Duvallet, K Foppe, TB Erickson, M Matus, PR Chai
Journal of Medical Toxicology 16 (2), 195-203, 2020
152020
dbOTU3: A new implementation of distribution-based OTU calling
SW Olesen, C Duvallet, EJ Alm
PLoS One 12 (5), e0176335, 2017
152017
Meta‐analysis generates and prioritizes hypotheses for translational microbiome research
C Duvallet
Microbial Biotechnology 11 (2), 273, 2018
132018
Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function
C Duvallet, K Larson, S Snapper, S Iosim, A Lee, K Freer, K May, E Alm, ...
PloS one 14 (5), e0216453, 2019
122019
Nationwide Trends in COVID-19 Cases and SARS-CoV-2 RNA Wastewater Concentrations in the United States
C Duvallet, F Wu, KA McElroy, M Imakaev, N Endo, A Xiao, J Zhang, ...
ACS ES&T Water, 2022
112022
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