Murray Cox
Murray Cox
Biological Data Analytics
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SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
MP Cox, DA Peterson, PJ Biggs
BMC Bioinformatics 11 (1), 485, 2010
A recent bottleneck of Y chromosome diversity coincides with a global change in culture
M Karmin, L Saag, M Vicente, MAW Sayres, M Järve, UG Talas, S Rootsi, ...
Genome Research 25 (4), 459-466, 2015
Genomic analyses inform on migration events during the peopling of Eurasia
L Pagani, DJ Lawson, E Jagoda, A Mörseburg, A Eriksson, M Mitt, ...
Nature 538 (7624), 238-242, 2016
Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci
CL Schardl, CA Young, U Hesse, SG Amyotte, K Andreeva, PJ Calie, ...
PLoS Genetics 9 (2), e1003323, 2013
Genomic insights into the peopling of the Southwest Pacific
P Skoglund, C Posth, K Sirak, M Spriggs, F Valentin, S Bedford, GR Clark, ...
Nature 538 (7626), 510-513, 2016
The GenomeAsia 100K Project enables genetic discoveries across Asia
JD Wall, E Stawiski, A Ratan, HL Kim, C Kim, R Gupta, K Suryamohan, ...
Nature 576, 106-111, 2019
Dense sampling of bird diversity increases power of comparative genomics
S Feng, J Stiller, Y Deng, J Armstrong, Q Fang, AH Reeve, D Xie, G Chen, ...
Nature 587, 252-257, 2020
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry
PJGM De Wit, A Van Der Burgt, B Ökmen, I Stergiopoulos, ...
PLoS Genetics 8 (11), e1003088, 2012
Multiple deeply divergent Denisovan ancestries in Papuans
GS Jacobs, G Hudjashov, L Saag, P Kusuma, CC Darusallam, DJ Lawson, ...
Cell 177, 1010-1021, 2019
Recombination-filtered genomic datasets by information maximization
AE Woerner, MP Cox, MF Hammer
Bioinformatics 23 (14), 1851-1853, 2007
Sex-biased evolutionary forces shape genomic patterns of human diversity
MF Hammer, FL Mendez, MP Cox, AE Woerner, JD Wall
PLoS genetics 4 (9), e1000202, 2008
Fungal endophyte infection of ryegrass reprograms host metabolism and alters development
PY Dupont, CJ Eaton, JJ Wargent, S Fechtner, P Solomon, J Schmid, ...
New Phytologist 208 (4), 1227-1240, 2015
Major east–west division underlies Y chromosome stratification across Indonesia
TM Karafet, B Hallmark, MP Cox, H Sudoyo, S Downey, JS Lansing, ...
Molecular Biology and Evolution 27 (8), 1833-1844, 2010
What triggers grass endophytes to switch from mutualism to pathogenism?
CJ Eaton, MP Cox, B Scott
Plant Science 180 (2), 190-195, 2011
The Indonesian archipelago: an ancient genetic highway linking Asia and the Pacific
MK Tumonggor, TM Karafet, B Hallmark, JS Lansing, H Sudoyo, ...
Journal of Human Genetics 58 (3), 165-173, 2013
Disruption of signaling in a fungal-grass symbiosis leads to pathogenesis
C Eaton, M Cox, B Ambrose, M Becker, U Hesse, C Schardl, B Scott
Plant Physiology 153, 1780-1794, 2010
A small cohort of Island Southeast Asian women founded Madagascar
MP Cox, MG Nelson, MK Tumonggor, FX Ricaut, H Sudoyo
Proceedings of the Royal Society of London B: Biological Sciences 279, 2761-2768, 2012
The ratio of human X chromosome to autosome diversity is positively correlated with genetic distance from genes
MF Hammer, AE Woerner, FL Mendez, JC Watkins, MP Cox, JD Wall
Nature Genetics 42 (10), 830-831, 2010
Coevolution of languages and genes on the island of Sumba, eastern Indonesia
JS Lansing, MP Cox, SS Downey, BM Gabler, B Hallmark, TM Karafet, ...
Proceedings of the National Academy of Sciences USA 104 (41), 16022-16026, 2007
A novel DNA sequence database for analyzing human demographic history
JD Wall, MP Cox, FL Mendez, A Woerner, T Severson, MF Hammer
Genome Research 18 (8), 1354-1361, 2008
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