| Automatic image cropping: A computational complexity study J Chen, G Bai, S Liang, Z Li Proceedings of the IEEE conference on computer vision and pattern …, 2016 | 131 | 2016 |
| Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling Q Liang, R Dharmat, L Owen, A Shakoor, Y Li, S Kim, A Vitale, I Kim, ... Nature communications 10 (1), 5743, 2019 | 101 | 2019 |
| Bi-order multimodal integration of single-cell data J Dou, S Liang, V Mohanty, Q Miao, Y Huang, Q Liang, X Cheng, S Kim, ... Genome biology 23 (1), 112, 2022 | 55* | 2022 |
| SCMarker: ab initio marker selection for single cell transcriptome profiling F Wang, S Liang, T Kumar, N Navin, K Chen PLoS computational biology 15 (10), e1007445, 2019 | 32 | 2019 |
| Latent periodic process inference from single-cell RNA-seq data S Liang, F Wang, J Han, K Chen Nature communications 11 (1), 1441, 2020 | 31 | 2020 |
| Single-cell manifold-preserving feature selection for detecting rare cell populations S Liang, V Mohanty, J Dou, Q Miao, Y Huang, M Müftüoğlu, L Ding, ... Nature computational science 1 (5), 374-384, 2021 | 25 | 2021 |
| MEDALT: single-cell copy number lineage tracing enabling gene discovery F Wang, Q Wang, V Mohanty, S Liang, J Dou, J Han, DC Minussi, R Gao, ... Genome biology 22, 1-22, 2021 | 23 | 2021 |
| Loss of metabolic fitness drives tumor resistance after CAR-NK cell therapy and can be overcome by cytokine engineering L Li, V Mohanty, J Dou, Y Huang, PP Banerjee, Q Miao, JG Lohr, ... Science Advances 9 (30), eadd6997, 2023 | 19 | 2023 |
| Occult polyclonality of preclinical pancreatic cancer models drives in vitro evolution ME Monberg, H Geiger, JJ Lee, R Sharma, A Semaan, V Bernard, J Wong, ... Nature communications 13 (1), 3652, 2022 | 15 | 2022 |
| Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection J Hou, Y Wei, J Zou, R Jaffery, L Sun, S Liang, N Zheng, AM Guerrero, ... Nature communications 15 (1), 109, 2024 | 11 | 2024 |
| In-depth analysis of SARS-CoV-2–specific T cells reveals diverse differentiation hierarchies in vaccinated individuals L Li, M Muftuoglu, S Liang, M Basyal, LV Jiangxing, ME Akdogan, K Chen, ... JCI insight 7 (7), 2022 | 10 | 2022 |
| Extended live-cell barcoding approach for multiplexed mass cytometry M Muftuoglu, L Li, S Liang, D Mak, AJ Lin, J Fang, JK Burks, K Chen, ... Scientific reports 11 (1), 12388, 2021 | 10 | 2021 |
| Decoupling lineage-associated genes in acute myeloid leukemia reveals inflammatory and metabolic signatures associated with outcomes HA Abbas, V Mohanty, R Wang, Y Huang, S Liang, F Wang, J Zhang, ... Frontiers in Oncology 11, 705627, 2021 | 9 | 2021 |
| Sensei: how many samples to tell a change in cell type abundance? S Liang, J Willis, J Dou, V Mohanty, Y Huang, E Vilar, K Chen BMC bioinformatics 23, 1-22, 2022 | 7* | 2022 |
| Stratified test accurately identifies differentially expressed genes under batch effects in single-cell data S Liang, Q Liang, R Chen, K Chen IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2021 | 5 | 2021 |
| Linear time symmetric axis search based on palindrome detection S Liang, J Chen, Z Li, G Bai 2016 IEEE International Conference on Image Processing (ICIP), 1799-1803, 2016 | 5 | 2016 |
| Single-cell CRISPR immune screens reveal immunological roles of tumor intrinsic factors J Hou, S Liang, C Xu, Y Wei, Y Wang, Y Tan, N Sahni, DJ McGrail, ... NAR cancer 4 (4), zcac038, 2022 | 3 | 2022 |
| Stratified test alleviates batch effects in single-cell data S Liang, Q Liang, R Chen, K Chen International Conference on Algorithms for Computational Biology, 167-177, 2020 | 3 | 2020 |
| Label-aware distance mitigates temporal and spatial variability for clustering and visualization of single-cell gene expression data S Liang, J Dou, R Iqbal, K Chen Communications Biology 7 (1), 326, 2024 | 1 | 2024 |
| Single-cell chromatin accessibility profiling of acute myeloid leukemia reveals heterogeneous lineage composition upon therapy-resistance H Fan, F Wang, A Zeng, A Murison, K Tomczak, D Hao, FZ Jelloul, ... Communications Biology 6 (1), 765, 2023 | 1 | 2023 |
Ken ChenProfessor of Bioinformatics and Computational Biology, The University of Texas MD AndersonVerified email at mdanderson.org
