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Job Dekker
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
135502012
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
E Lieberman-Aiden, NL Van Berkum, L Williams, M Imakaev, T Ragoczy, ...
science 326 (5950), 289-293, 2009
66282009
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
56282007
Capturing chromosome conformation
J Dekker, K Rippe, M Dekker, N Kleckner
science 295 (5558), 1306-1311, 2002
36592002
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
26442012
Spatial partitioning of the regulatory landscape of the X-inactivation centre
EP Nora, BR Lajoie, EG Schulz, L Giorgetti, I Okamoto, N Servant, T Piolot, ...
Nature 485 (7398), 381-385, 2012
24582012
The ENCODE (ENCyclopedia of DNA elements) project
EA Feingold, L Pachter
Science 306 (5696), 636-640, 2004
20292004
Mediator and cohesin connect gene expression and chromatin architecture
MH Kagey, JJ Newman, S Bilodeau, Y Zhan, DA Orlando, NL van Berkum, ...
Nature 467 (7314), 430-435, 2010
19592010
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
KC Wang, YW Yang, B Liu, A Sanyal, R Corces-Zimmerman, Y Chen, ...
Nature 472 (7341), 120-124, 2011
19102011
The long-range interaction landscape of gene promoters
A Sanyal, BR Lajoie, G Jain, J Dekker
Nature 489 (7414), 109-113, 2012
14952012
Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements
J Dostie, TA Richmond, RA Arnaout, RR Selzer, WL Lee, TA Honan, ...
Genome research 16 (10), 1299-1309, 2006
12642006
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
JE Phillips-Cremins, MEG Sauria, A Sanyal, TI Gerasimova, BR Lajoie, ...
Cell 153 (6), 1281-1295, 2013
10952013
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
M Imakaev, G Fudenberg, RP McCord, N Naumova, A Goloborodko, ...
Nature methods 9 (10), 999-1003, 2012
10632012
Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization
EP Nora, A Goloborodko, AL Valton, JH Gibcus, A Uebersohn, ...
Cell 169 (5), 930-944. e22, 2017
10572017
Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
J Dekker, MA Marti-Renom, LA Mirny
Nature Reviews Genetics 14 (6), 390-403, 2013
10392013
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ...
Genome biology 16 (1), 1-11, 2015
10112015
Organization of the mitotic chromosome
N Naumova, M Imakaev, G Fudenberg, Y Zhan, BR Lajoie, LA Mirny, ...
Science 342 (6161), 948-953, 2013
8502013
Activation of proto-oncogenes by disruption of chromosome neighborhoods
D Hnisz, AS Weintraub, DS Day, AL Valton, RO Bak, CH Li, J Goldmann, ...
Science 351 (6280), 1454-1458, 2016
7832016
Defining functional DNA elements in the human genome
M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ...
Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014
7452014
Hi–C: a comprehensive technique to capture the conformation of genomes
JM Belton, RP McCord, JH Gibcus, N Naumova, Y Zhan, J Dekker
Methods 58 (3), 268-276, 2012
7122012
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