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Melek Nihan Ucisik
Melek Nihan Ucisik
Principal Computational Chemist at Foghorn Therapeutics
Verified email at foghorntx.com - Homepage
Title
Cited by
Cited by
Year
Insight into the cation− π interaction at the metal binding site of the copper metallochaperone CusF
DK Chakravorty, B Wang, MN Ucisik, KM Merz Jr
Journal of the American Chemical Society 133 (48), 19330-19333, 2011
582011
Discovery of potent thrombin inhibitors from a protease-focused DNA-encoded chemical library
S Dawadi, N Simmons, G Miklossy, KM Bohren, JC Faver, MN Ucisik, ...
Proceedings of the National Academy of Sciences 117 (29), 16782-16789, 2020
492020
DNA-encoded chemistry technology yields expedient access to SARS-CoV-2 Mpro inhibitors
S Chamakuri, S Lu, MN Ucisik, KM Bohren, YC Chen, HC Du, JC Faver, ...
Proceedings of the National Academy of Sciences 118 (36), e2111172118, 2021
462021
Discovery and characterization of bromodomain 2–specific inhibitors of BRDT
Z Yu, AF Ku, JL Anglin, R Sharma, MN Ucisik, JC Faver, F Li, ...
Proceedings of the National Academy of Sciences 118 (9), e2021102118, 2021
462021
Molecular Dynamics Study of Helicobacter pylori Urease
MS Minkara, MN Ucisik, MN Weaver, KM Merz Jr
Journal of chemical theory and computation 10 (5), 1852-1862, 2014
442014
C–N coupling of DNA-conjugated (hetero) aryl bromides and chlorides for DNA-encoded chemical library synthesis
YC Chen, JC Faver, AF Ku, G Miklossy, K Riehle, KM Bohren, MN Ucisik, ...
Bioconjugate Chemistry 31 (3), 770-780, 2020
432020
Molecular Dynamics Study of Twister Ribozyme: Role of Mg2+ Ions and the Hydrogen-Bonding Network in the Active Site
MN Ucisik, PC Bevilacqua, S Hammes-Schiffer
Biochemistry 55 (27), 3834-3846, 2016
352016
Identifying oxacillinase-48 carbapenemase inhibitors using DNA-encoded chemical libraries
DM Taylor, J Anglin, S Park, MN Ucisik, JC Faver, N Simmons, Z Jin, ...
ACS infectious diseases 6 (5), 1214-1227, 2020
322020
Structure and dynamics of the N-terminal domain of the Cu (I) binding protein CusB
MN Ucisik, DK Chakravorty, KM Merz Jr
Biochemistry 52 (39), 6911-6923, 2013
292013
Bringing clarity to the prediction of protein–ligand binding free energies via “blurring”
MN Ucisik, Z Zheng, JC Faver, KM Merz
Journal of Chemical Theory and Computation 10 (3), 1314-1325, 2014
272014
The movable type method applied to protein–ligand binding
Z Zheng, MN Ucisik, KM Merz
Journal of chemical theory and computation 9 (12), 5526-5538, 2013
272013
Prediction of trypsin/molecular fragment binding affinities by free energy decomposition and empirical scores
ML Benson, JC Faver, MN Ucisik, DS Dashti, Z Zheng, KM Merz
Journal of computer-aided molecular design 26, 647-659, 2012
242012
Pairwise additivity of energy components in protein-ligand binding: The HIV II protease-indinavir case
MN Ucisik, DS Dashti, JC Faver, KM Merz
The Journal of chemical physics 135 (8), 2011
242011
Trapping intermediates in metal transfer reactions of the CusCBAF export pump of Escherichia coli
KN Chacón, J Perkins, Z Mathe, K Alwan, EN Ho, MN Ucisik, KM Merz, ...
Communications Biology 1 (1), 192, 2018
232018
Origins of the diastereoselectivity in hydrogen bonding directed Diels–Alder reactions of chiral dienes with achiral dienophiles: a computational study
S Agopcan, N Çelebi-Ölçüm, MN Üçışık, A Sanyal, V Aviyente
Organic & Biomolecular Chemistry 9 (23), 8079-8088, 2011
202011
Discovery of potent BET bromodomain 1 stereoselective inhibitors using DNA-encoded chemical library selections
RK Modukuri, Z Yu, Z Tan, HM Ta, MN Ucisik, Z Jin, JL Anglin, KL Sharma, ...
Proceedings of the National Academy of Sciences 119 (22), e2122506119, 2022
192022
Insights into the mechanistic dichotomy of the protein farnesyltransferase peptide substrates CVIM and CVLS
Y Yang, B Wang, MN Ucisik, G Cui, CA Fierke, KM Merz Jr
Journal of the American Chemical Society 134 (2), 820-823, 2012
182012
Relative binding free energies of adenine and guanine to damaged and undamaged DNA in human DNA polymerase η: Clues for fidelity and overall efficiency
MN Ucisik, S Hammes-Schiffer
Journal of the American Chemical Society 137 (41), 13240-13243, 2015
172015
Computer-aided drug design: using numbers to your advantage
JC Faver, MN Ucisik, W Yang, KM Merz Jr
ACS medicinal chemistry letters 4 (9), 812-814, 2013
172013
Models for the metal transfer complex of the N-terminal region of CusB and CusF
MN Ucisik, DK Chakravorty, KM Merz Jr
Biochemistry 54 (27), 4226-4235, 2015
122015
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