Jean-Philippe Vert

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	All	Since 2018
Citations	21708	10799
h-index	70	48
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laurent jacobCNRS, Université Lyon 1Verified email at univ-lyon1.fr
Francis BachInria - Ecole Normale SupérieureVerified email at inria.fr
William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Emmanuel BarillotInstitut Curie, INSERM, Mines ParisTech, U900Verified email at curie.fr
Tatsuya AkutsuProfessor, Bioinformatics Center, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Nelle VaroquauxCNRS, Université Grenoble AlpesVerified email at univ-grenoble-alpes.fr
Marco CuturiApple / CREST-ENSAE.Verified email at apple.com
Koji TsudaProfessor, GSFS, The University of TokyoVerified email at k.u-tokyo.ac.jp
Bernhard SchölkopfDirector, Max Planck Institute for Intelligent Systems; Professor at ETH ZürichVerified email at tuebingen.mpg.de
Pierre MahébioMérieuxVerified email at biomerieux.com
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Andrei ZinovyevIn silico R&D EvoTec, Institut Curie, PRAIRIEVerified email at evotec.com
kevin bleakleyINRIA, FranceVerified email at inria.fr
Hiroto SaigoKyushu UniversityVerified email at inf.kyushu-u.ac.jp
Yoshihiro YamanishiKyushu Institute of TechnologyVerified email at bio.kyutech.ac.jp
Mikhail ZaslavskiyVerified email at ensmp.fr
Valentina BoevaAssistant Prof., ETH Zürich, Department of Computer ScienceVerified email at inf.ethz.ch
Ferhat AyAssociate Professor, La Jolla Institute for ImmunologyVerified email at lji.org
Nicolas ServantInstitut CurieVerified email at curie.fr
Fanny PerraudeauBain & CompanyVerified email at bain.com

Jean-Philippe Vert

Owkin / PSL University

Verified email at mines-paristech.fr - Homepage

machine learning computational biology statistics bioinformatics artificial intelligence


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Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1621	2012
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ... Genome biology 16 (1), 1-11, 2015	1313	2015
Group lasso with overlap and graph lasso L Jacob, G Obozinski, JP Vert Proceedings of the 26th annual international conference on machine learning …, 2009	1088	2009
Kernel methods in computational biology B Schölkopf, K Tsuda, JPV Vert MIT press, 2004	1019	2004
A community effort to assess and improve drug sensitivity prediction algorithms Nature Biotechnology 32, 1202-1212, 2014	668	2014
A primer on kernel methods JP Vert, K Tsuda, B Schölkopf Kernel Methods in Computational Biology, 35-70, 2004	542	2004
Clustered multitask learning: A convex relaxation L Jacob, F Bach, JP Vert Advances in Neural Information Processing Systems 21, 2009	537*	2009
A general and flexible method for signal extraction from single-cell RNA-seq data D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert Nature communications 9 (1), 284, 2018	518	2018
Consistency of random forests E Scornet, G Biau, JP Vert Annals of Statistics 43 (4), 1716-1741, 2015	510	2015
Protein homology detection using string alignment kernels H Saigo, JP Vert, N Ueda, T Akutsu Bioinformatics 20 (11), 1682-1689, 2004	488	2004
A path following algorithm for the graph matching problem M Zaslavskiy, F Bach, JP Vert IEEE Transactions on Pattern Analysis and Machine Intelligence 31 (12), 2227 …, 2008	434	2008
The influence of feature selection methods on accuracy, stability and interpretability of molecular signatures AC Haury, P Gestraud, JP Vert PloS one 6 (12), e28210, 2011	433	2011
TIGRESS: trustful inference of gene regulation using stability selection AC Haury, F Mordelet, P Vera-Licona, JP Vert BMC systems biology 6 (1), 1-17, 2012	403	2012
Protein-ligand interaction prediction: an improved chemogenomics approach L Jacob, JP Vert bioinformatics 24 (19), 2149-2156, 2008	385	2008
Classification of microarray data using gene networks F Rapaport, A Zinovyev, M Dutreix, E Barillot, JP Vert BMC bioinformatics 8, 1-15, 2007	323	2007
An accurate and interpretable model for siRNA efficacy prediction JP Vert, N Foveau, C Lajaunie, Y Vandenbrouck BMC bioinformatics 7 (1), 1-17, 2006	321	2006
Protein network inference from multiple genomic data: a supervised approach Y Yamanishi, JP Vert, M Kanehisa Bioinformatics 20 (suppl_1), i363-i370, 2004	304	2004
Clusterpath an algorithm for clustering using convex fusion penalties TD Hocking, A Joulin, F Bach, JP Vert 28th international conference on machine learning, 1, 2011	303	2011
A New Approach to Collaborative Filtering: Operator Estimation with Spectral Regularization. J Abernethy, F Bach, T Evgeniou, JP Vert Journal of Machine Learning Research 10 (3), 2009	299	2009
Graph kernels based on tree patterns for molecules P Mahé, JP Vert Machine learning 75 (1), 3-35, 2009	296	2009

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