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Robbie P. Joosten
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A series of PDB related databases for everyday needs
RP Joosten, TAH Te Beek, E Krieger, ML Hekkelman, RWW Hooft, ...
Nucleic acids research 39 (suppl_1), D411-D419, 2010
6982010
A series of PDB-related databanks for everyday needs
WG Touw, C Baakman, J Black, TAH Te Beek, E Krieger, RP Joosten, ...
Nucleic acids research 43 (D1), D364-D368, 2015
6522015
The PDB_REDO server for macromolecular structure model optimization
RP Joosten, F Long, GN Murshudov, A Perrakis
IUCrJ 1 (4), 213-220, 2014
5882014
A new generation of crystallographic validation tools for the Protein Data Bank
RJ Read, PD Adams, WB Arendall III, AT Brunger, P Emsley, RP Joosten, ...
Structure 19, 1395-1412, 2011
4322011
A new generation of crystallographic validation tools for the Protein Data Bank
RJ Read, PD Adams, WB Arendall, AT Brunger, P Emsley, RP Joosten, ...
Structure 19 (10), 1395-1412, 2011
4312011
PDB_REDO: automated re-refinement of X-ray structure models in the PDB
RP Joosten, J Salzemann, V Bloch, H Stockinger, AC Berglund, ...
Journal of applied crystallography 42 (3), 376-384, 2009
2182009
PDB_REDO: constructive validation, more than just looking for errors
RP Joosten, K Joosten, GN Murshudov, A Perrakis
Acta Crystallographica Section D: Biological Crystallography 68 (4), 484-496, 2012
1962012
Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank
RP Joosten, K Joosten, SX Cohen, G Vriend, A Perrakis
Bioinformatics 27 (24), 3392-3398, 2011
872011
Re-refinement from deposited X-ray data can deliver improved models for most PDB entries
RP Joosten, T Womack, G Vriend, G Bricogne
Acta Crystallographica Section D: Biological Crystallography 65 (2), 176-185, 2009
862009
Structure of NPP1, an ectonucleotide pyrophosphatase/phosphodiesterase involved in tissue calcification
S Jansen, A Perrakis, C Ulens, C Winkler, M Andries, RP Joosten, ...
Structure 20 (11), 1948-1959, 2012
772012
Homology modelling and spectroscopy, a never-ending love story
H Venselaar, RP Joosten, B Vroling, CAB Baakman, ML Hekkelman, ...
European Biophysics Journal 39 (4), 551-563, 2010
732010
Steroid binding to Autotaxin links bile salts and lysophosphatidic acid signalling
WJ Keune, J Hausmann, R Bolier, D Tolenaars, A Kremer, T Heidebrecht, ...
Nature communications 7 (1), 1-10, 2016
712016
The first step of peptide selection in antigen presentation by MHC class I molecules
MA Garstka, A Fish, PHN Celie, RP Joosten, GMC Janssen, I Berlin, ...
Proceedings of the National Academy of Sciences 112 (5), 1505-1510, 2015
632015
PDB improvement starts with data deposition
RP Joosten, G Vriend
Science 317 (5835), 195-196, 2007
522007
Structure of a calcium-deficient form of influenza virus neuraminidase: implications for substrate binding
BJ Smith, T Huyton, RP Joosten, JL McKimm-Breschkin, JG Zhang, ...
Biological Crystallography 500 (62), 1002-1011, 2006
462006
Structure of a calcium-deficient form of influenza virus neuraminidase: implications for substrate binding
BJ Smith, T Huyton, RP Joosten, JL McKimm-Breschkin, JG Zhang, ...
Acta Crystallographica Section D: Biological Crystallography 62 (9), 947-952, 2006
452006
The good, the bad and the dubious: VHELIBS, a validation helper for ligands and binding sites
A Cereto-Massagué, MJ Ojeda, RP Joosten, C Valls, M Mulero, ...
Journal of Cheminformatics 5 (1), 1-9, 2013
432013
A global Ramachandran score identifies protein structures with unlikely stereochemistry
OV Sobolev, PV Afonine, NW Moriarty, ML Hekkelman, RP Joosten, ...
Structure 28 (11), 1249-1258. e2, 2020
342020
New biological insights from better structure models
WG Touw, RP Joosten, G Vriend
Journal of molecular biology 428 (6), 1375-1393, 2016
332016
Homology‐based hydrogen bond information improves crystallographic structures in the PDB
B van Beusekom, WG Touw, M Tatineni, S Somani, G Rajagopal, J Luo, ...
Protein Science 27 (3), 798-808, 2018
312018
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