| Automated image analysis for high-content screening and analysis A Shariff, J Kangas, LP Coelho, S Quinn, RF Murphy Journal of biomolecular screening 15 (7), 726-734, 2010 | 165 | 2010 |
| Determining the subcellular location of new proteins from microscope images using local features LP Coelho, JD Kangas, AW Naik, E Osuna-Highley, E Glory-Afshar, ... Bioinformatics 29 (18), 2343-2349, 2013 | 81 | 2013 |
| Optimizing drug discovery by investigative toxicology: current and future trends M Beilmann, H Boonen, A Czich, G Dear, P Hewitt, T Mow, P Newham, ... ALTEX-Alternatives to animal experimentation 36 (2), 289-313, 2019 | 56 | 2019 |
| Active machine learning-driven experimentation to determine compound effects on protein patterns AW Naik, JD Kangas, DP Sullivan, RF Murphy Elife 5, e10047, 2016 | 53 | 2016 |
| Structured literature image finder: extracting information from text and images in biomedical literature LP Coelho, A Ahmed, A Arnold, J Kangas, AS Sheikh, EP Xing, ... Linking Literature, Information, and Knowledge for Biology, 23-32, 2010 | 47 | 2010 |
| Efficient discovery of responses of proteins to compounds using active learning JD Kangas, AW Naik, RF Murphy BMC bioinformatics 15 (1), 1-11, 2014 | 42 | 2014 |
| Efficient modeling and active learning discovery of biological responses AW Naik, JD Kangas, CJ Langmead, RF Murphy PLoS One 8 (12), e83996, 2013 | 36 | 2013 |
| Principles of bioimage informatics: Focus on machine learning of cell patterns LP Coelho, E Glory-Afshar, J Kangas, S Quinn, A Shariff, RF Murphy Linking Literature, Information, and Knowledge for Biology, 8-18, 2010 | 31 | 2010 |
| Structured literature image finder: Parsing text and figures in biomedical literature A Ahmed, A Arnold, LP Coelho, J Kangas, AS Sheikh, E Xing, W Cohen, ... Web Semantics: Science, Services and Agents on the World Wide Web 8 (2-3 …, 2010 | 21 | 2010 |
| Linking Literature, Information, and Knowledge for Biology LP Coelho, A Ahmed, A Arnold, J Kangas, AS Sheikh, EP Xing, ... Berlin, Heidelberg: Springer Berlin Heidelberg, 2010 | 8 | 2010 |
| 10 simple rules for teaching wet-lab experimentation to computational biology students, ie, turning computer mice into lab rats JC Ayoob, JD Kangas PLOS Computational Biology 16 (6), e1007911, 2020 | 5 | 2020 |
| Structured literature image finder: Open source software for extracting and disseminating information from text and figures in biomedical literature AS Sheikh, A Ahmed, A Arnold, LP Coelho, J Kangas, EP Xing, W Cohen, ... Tech. rep., Carnegie Mellon University School of Computer Science …, 2009 | 4 | 2009 |
| A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts GR Johnson, JD Kangas, A Dovzhenko, R Trojok, K Voigt, TD Majarian, ... Cytometry Part A 91 (4), 326-335, 2017 | 3 | 2017 |
| Structured literature image finder A Ahmed, A Arnold, LP Coelho, J Kangas, AS Sheikh, E Xing, W Cohen, ... Proc. of the ISMB BioLINK special interest group, 209-212, 2009 | 2 | 2009 |
| Active learning for drug discovery J Kangas, GK Rohde, J Schneider, DL Taylor no. February, 2013 | 1 | 2013 |
| Electronic system with a data engine for processing retrieved data in displaying graphical data for a graphical user interface on an external input/output device AW Naik, JD Kangas, CJ Langmead, RF Murphy US Patent App. 16/296,088, 2020 | | 2020 |
| Learning to predict effects of compounds on targets AW Naik, JD Kangas, CJ Langmead, RF Murphy US Patent App. 13/985,247, 2014 | | 2014 |
| Theses by Author TE BUCK, LP COELHO, RE CURTIS, JM JOSEPH, S KADRI, J KANG, ... | | |
| AHMED, Amr CMU-CB-09-101 ARNOLD, Andrew CMU-CB-09-101 BUCK, Taráz E. CMU-CB-13-105 CHOWDHURY, Salim Akhter CMU-CB-15-101 LP COELHO, W COHEN, RE CURTIS, G DUGGAL, D FARROW, ... | | |
| AHMED, Amr CMU-CB-09-101 ARNOLD, Andrew CMU-CB-09-101 BUCK, Taráz E. CMU-CB-13-105 COELHO, Luis Pedro CMU-CB-09-101, CMU-CB-11-104 W COHEN, RE CURTIS, JM JOSEPH, S KADRI, H KAMISETTY, J KANG, ... | | |
