Barry Demchak
Title
Cited by
Cited by
Year
Biological network exploration with Cytoscape 3
G Su, JH Morris, B Demchak, GD Bader
Current protocols in bioinformatics 47 (1), 8.13. 1-8.13. 24, 2014
4362014
NDEx, the network data exchange
D Pratt, J Chen, D Welker, R Rivas, R Pillich, V Rynkov, K Ono, C Miello, ...
Cell systems 1 (4), 302-305, 2015
198*2015
The common component modeling example
A Rausch, R Reussner, R Mirandola, F Plasil
Lecture notes in computer science 5153, 96, 2008
1422008
Using deep learning to model the hierarchical structure and function of a cell
J Ma, MK Yu, S Fong, K Ono, E Sage, B Demchak, R Sharan, T Ideker
Nature methods 15 (4), 290, 2018
1302018
Cytoscape automation: empowering workflow-based network analysis
D Otasek, JH Morris, J Bouças, AR Pico, B Demchak
Genome biology 20 (1), 1-15, 2019
1172019
Cytoscape: the network visualization tool for GenomeSpace workflows
B Demchak, T Hull, M Reich, T Liefeld, M Smoot, T Ideker, JP Mesirov
F1000Research 3, 2014
912014
Validity of PALMS GPS scoring of active and passive travel compared to SenseCam
JA Carlson, MM Jankowska, K Meseck, S Godbole, L Natarajan, F Raab, ...
Medicine and science in sports and exercise 47 (3), 662, 2015
852015
CyREST: Turbocharging cytoscape access for external tools via a RESTful API
K Ono, T Muetze, G Kolishovski, P Shannon, B Demchak
F1000Research 4, 2015
582015
Rich Services: The integration piece of the SOA puzzle
M Arrott, B Demchak, V Ermagan, C Farcas, E Farcas, IH Kriiger, ...
IEEE International Conference on Web Services (ICWS 2007), 176-183, 2007
462007
Network propagation in the cytoscape cyberinfrastructure
DE Carlin, B Demchak, D Pratt, E Sage, T Ideker
PLoS computational biology 13 (10), e1005598, 2017
372017
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace
K Qu, S Garamszegi, F Wu, H Thorvaldsdottir, T Liefeld, M Ocana, ...
Nature methods 13 (3), 245-247, 2016
352016
The anatomy of successful computational biology software
S Altschul, B Demchak, R Durbin, R Gentleman, M Krzywinski, H Li, ...
Nature biotechnology 31 (10), 894-897, 2013
282013
PALMS: a modern coevolution of community and computing using policy driven development
B Demchak, J Kerr, F Raab, K Patrick, IH Kruger
2012 45th Hawaii International Conference on System Sciences, 2735-2744, 2012
282012
NDEx 2.0: a clearinghouse for research on cancer pathways
D Pratt, J Chen, R Pillich, V Rynkov, A Gary, B Demchak, T Ideker
Cancer research 77 (21), e58-e61, 2017
272017
Active interaction mapping reveals the hierarchical organization of autophagy
MH Kramer, JC Farré, K Mitra, MK Yu, K Ono, B Demchak, K Licon, ...
Molecular cell 65 (4), 761-774. e5, 2017
272017
Cytoscape tools for the web age: D3. js and Cytoscape. js exporters
K Ono, B Demchak, T Ideker
F1000Research 3, 2014
262014
Middleware for reliable mobile medical workflow support in disaster settings
SW Brown, WG Griswold, B Demchak, BALA Lenert
AMIA Annual Symposium Proceedings 2006, 309, 2006
262006
A rich services approach to cocome
B Demchak, V Ermagan, E Farcas, T Huang, IH Krüger, M Menarini
The Common Component Modeling Example, 85-115, 2008
242008
Validating GPS data with the PALMS system to detect different active transportation modes
J Kerr, G Norman, S Godbole, F Raab, B Demchak, K Patrick
Medicine and Science in Sports and Exercise 44, 647-647, 2012
222012
NeXO Web: the NeXO ontology database and visualization platform
J Dutkowski, K Ono, M Kramer, M Yu, D Pratt, B Demchak, T Ideker
Nucleic acids research 42 (D1), D1269-D1274, 2014
202014
The system can't perform the operation now. Try again later.
Articles 1–20