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Bahar Alipanahi
Bahar Alipanahi
Delfi Diagnostics
Verified email at delfidiagnostics.com
Title
Cited by
Cited by
Year
Building large updatable colored de Bruijn graphs via merging
MD Muggli, B Alipanahi, C Boucher
Bioinformatics 35 (14), i51-i60, 2019
442019
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
Communications biology 2 (1), 294, 2019
292019
Metagenome SNP calling via read-colored de Bruijn graphs
B Alipanahi, MD Muggli, M Jundi, NR Noyes, C Boucher
Bioinformatics 36 (22-23), 5275-5281, 2020
16*2020
Succinct dynamic de Bruijn graphs
B Alipanahi, A Kuhnle, SJ Puglisi, L Salmela, C Boucher
Bioinformatics 37 (14), 1946-1952, 2021
132021
Recoloring the colored de Bruijn graph
B Alipanahi, A Kuhnle, C Boucher
International Symposium on String Processing and Information Retrieval, 1-11, 2018
122018
Buffering updates enables efficient dynamic de Bruijn graphs
J Alanko, B Alipanahi, J Settle, C Boucher, T Gagie
Computational and structural biotechnology journal 19, 4067-4078, 2021
82021
Aligning optical maps to de Bruijn graphs
K Mukherjee, B Alipanahi, T Kahveci, L Salmela, C Boucher
Bioinformatics 35 (18), 3250-3256, 2019
82019
Hierarchical hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences. Commun Biol 2: 294
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
82019
Disentangled long-read de Bruijn graphs via optical maps
B Alipanahi, L Salmela, SJ Puglisi, M Muggli, C Boucher
bioRxiv, 094235, 2016
82016
Variants and Applications of Colored De Bruijn Graphs
B Alipanahi
University of Florida, 2020
12020
Longitudinal cell-free tumor load dynamics represent an early endpoint for immunotherapy response in non-small cell lung cancer
L Sivapalan, B Alipanahi, A Balan, JE Medina, N Niknafs, E Peters, ...
Cancer Research 84 (6_Supplement), 6557-6557, 2024
2024
Robustness of fragmentation-based cell-free DNA approaches to clonal hematopoiesis
S Cristiano, B Alipanahi, JE Medina, L Rinaldi, N Dracopoli, RB Scharpf, ...
Cancer Research 84 (6_Supplement), 981-981, 2024
2024
Monitoring response to immunotherapy using cell free DNA fragmentomes
B Alipanahi, L Sivapalan, J Medina, ZL Skidmore, P Ghanem, E Peters, ...
Cancer Research 84 (6_Supplement), 3695-3695, 2024
2024
40. Cell-free DNA fragmentation profiling as a method for tumor fraction assessment and treatment monitoring in NSCLC
Z Skidmore, B Alipanahi, L Rinaldi, N Dracopoli, A Leal
Cancer Genetics 278, 12-13, 2023
2023
Dissecting small cell lung cancer subtypes with cell-free DNA fragmentomes.
L Rinaldi, ZL Skidmore, B Alipanahi, G Graham, B Chesnick, N Takahashi, ...
Journal of Clinical Oncology 41 (16_suppl), 8592-8592, 2023
2023
Cell-free DNA fragmentation profiling for therapeutic response monitoring in metastatic colorectal cancer.
ZL Skidmore, I van't Erve, K Lumbard, B Alipanahi, L Keefer, L Rinaldi, ...
Journal of Clinical Oncology 41 (16_suppl), e15664-e15664, 2023
2023
Cell-free DNA fragmentation profiling for monitoring therapeutic response in metastatic colorectal cancer
B Alipanahi, I van't Erve, K Lumbard, LK Millberg, Z Skidmore, L Rinaldi, ...
Cancer Research 83 (7_Supplement), 5714-5714, 2023
2023
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