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Mingfu Shao
Mingfu Shao
Department of Computer Science and Engineerings, The Pennsylvania State University
Verified email at psu.edu - Homepage
Title
Cited by
Cited by
Year
Accurate assembly of transcripts through phase-preserving graph decomposition
M Shao, C Kingsford
Nature biotechnology 35 (12), 1167-1169, 2017
1862017
An exact algorithm to compute the double-cut-and-join distance for genomes with duplicate genes
M Shao, Y Lin, BME Moret
Journal of Computational Biology 22 (5), 425-435, 2015
812015
Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion
M Shao, Y Lin
BMC bioinformatics 13 (Suppl 19), S13, 2012
482012
Theory and a heuristic for the minimum path flow decomposition problem
M Shao, C Kingsford
IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017
292017
SQUID: transcriptomic structural variation detection from RNA-seq
C Ma, M Shao, C Kingsford
Genome biology 19 (1), 52, 2018
262018
Comparing genomes with rearrangements and segmental duplications
M Shao, BME Moret
Bioinformatics 31 (12), i329-i338, 2015
222015
Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads
LH Tung, M Shao, C Kingsford
Genome biology 20, 1-18, 2019
172019
Sorting genomes with rearrangements and segmental duplications through trajectory graphs
M Shao, Y Lin, B Moret
BMC Bioinformatics 14 (Suppl 15), S9, 2013
172013
DeepBound: accurate identification of transcript boundaries via deep convolutional neural fields
M Shao, J Ma, S Wang
Bioinformatics 33 (14), i267-i273, 2017
162017
A fast and exact algorithm for the exemplar breakpoint distance
M Shao, BME Moret
Journal of Computational Biology 23 (5), 337-346, 2016
132016
On computing breakpoint distances for genomes with duplicate genes
M Shao, B Moret
Journal of Computational Biology 24 (6), 571-580, 2017
122017
Incorporating Ab Initio energy into threading approaches for protein structure prediction
M Shao, S Wang, C Wang, X Yuan, SC Li, W Zheng, D Bu
BMC bioinformatics 12 (Suppl 1), S54, 2011
112011
Accurate assembly of multi-end RNA-seq data with Scallop2
Q Zhang, Q Shi, M Shao
Nature computational science 2 (3), 148-152, 2022
82022
Scallop2 enables accurate assembly of multiple-end RNA-seq data
Q Zhang, Q Shi, M Shao
BioRxiv, 2021.09. 03.458862, 2021
72021
A maximum-likelihood approach for building cell-type trees by lifting
NU Nair, L Hunter, M Shao, P Grnarova, Y Lin, P Bucher, BM E. Moret
BMC genomics 17, 33-40, 2016
42016
Context-aware seeds for read mapping
H Xin, M Shao, C Kingsford
Algorithms for Molecular Biology 15, 1-12, 2020
32020
On de novo Bridging Paired-end RNA-seq Data
X Li, M Shao
Proceedings of the 14th ACM International Conference on Bioinformatics …, 2023
12023
On bridging paired-end RNA-seq data
X Li, Q Shi, M Shao
BioRxiv, 2021.02. 26.433113, 2021
12021
Improving protein threading accuracy via combining local and global potential using treecrf model
H Zhang, M Shao, C Wang, J Zhu, WM Zheng, D Bu
arXiv preprint arXiv:1509.03434, 2015
12015
Models and algorithms for comparative genomics
M Shao
EPFL, 2015
12015
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