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Eric P Nawrocki
Eric P Nawrocki
National Center for Biotechnology Information (NCBI), NLM, NIH
Verified email at ncbi.nlm.nih.gov
Title
Cited by
Cited by
Year
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610-618, 2012
51652012
NCBI prokaryotic genome annotation pipeline
T Tatusova, M DiCuccio, A Badretdin, V Chetvernin, EP Nawrocki, ...
Nucleic acids research 44 (14), 6614-6624, 2016
51022016
Infernal 1.1: 100-fold faster RNA homology searches
EP Nawrocki, SR Eddy
Bioinformatics 29 (22), 2933-2935, 2013
24522013
Infernal 1.0: inference of RNA alignments
EP Nawrocki, DL Kolbe, SR Eddy
Bioinformatics 25 (10), 1335-1337, 2009
15472009
Rfam 12.0: updates to the RNA families database
EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ...
Nucleic acids research 43 (D1), D130-D137, 2015
10362015
Rfam: updates to the RNA families database
PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ...
Nucleic acids research 37 (suppl_1), D136-D140, 2009
9752009
Rfam 11.0: 10 years of RNA families
SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ...
Nucleic acids research 41 (D1), D226-D232, 2013
9062013
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera, EP Nawrocki, E Rivas, ...
Nucleic acids research 46 (D1), D335-D342, 2018
8942018
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ...
Nucleic Acids Research 49 (D1), D192-D200, 2021
5152021
Rfam: Wikipedia, clans and the “decimal” release
PP Gardner, J Daub, J Tate, BL Moore, IH Osuch, S Griffiths-Jones, ...
Nucleic acids research 39 (suppl_1), D141-D145, 2010
4712010
Virus Variation Resource–improved response to emergent viral outbreaks
EL Hatcher, SA Zhdanov, Y Bao, O Blinkova, EP Nawrocki, Y Ostapchuck, ...
Nucleic acids research 45 (D1), D482-D490, 2017
3912017
Query-dependent banding (QDB) for faster RNA similarity searches
EP Nawrocki, SR Eddy
PLoS computational biology 3 (3), e56, 2007
3442007
Non‐coding RNA analysis using the Rfam database
I Kalvari, EP Nawrocki, J Argasinska, N Quinones‐Olvera, RD Finn, ...
Current protocols in bioinformatics 62 (1), e51, 2018
3232018
Structural RNA homology search and alignment using covariance models
EP Nawrocki
Washington University in St. Louis, 2009
2562009
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic Acids Research 47 (D1), D221-D229, 2019
2192019
Integrating membrane transport with male gametophyte development and function through transcriptomics
KW Bock, D Honys, JM Ward, S Padmanaban, EP Nawrocki, KD Hirschi, ...
Plant Physiology 140 (4), 1151-1168, 2006
2012006
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Nucleic acids research 49 (D1), D212-D220, 2021
1632021
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ...
Briefings in bioinformatics 22 (2), 642-663, 2021
1422021
RNIE: genome-wide prediction of bacterial intrinsic terminators
PP Gardner, L Barquist, A Bateman, EP Nawrocki, Z Weinberg
Nucleic acids research 39 (14), 5845-5852, 2011
922011
Annotating functional RNAs in genomes using Infernal
EP Nawrocki
RNA sequence, structure, and function: computational and bioinformatic …, 2014
772014
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Articles 1–20