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Jayson Harshbarger
Jayson Harshbarger
Technical Scientist at RIKEN Center for Life Science Technologies
Verified email at gsc.riken.jp
Title
Cited by
Cited by
Year
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
17802014
An atlas of human long non-coding RNAs with accurate 5′ ends
CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ...
Nature 543 (7644), 199-204, 2017
10512017
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome biology 16, 1-14, 2015
8972015
The BioMart community portal: an innovative alternative to large, centralized data repositories
D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ...
Nucleic acids research 43 (W1), W589-W598, 2015
8362015
A draft network of ligand–receptor-mediated multicellular signalling in human
JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ...
Nature communications 6 (1), 7866, 2015
8032015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ...
Science 347 (6225), 1010-1014, 2015
6282015
An integrated expression atlas of miRNAs and their promoters in human and mouse
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature biotechnology 35 (9), 872-878, 2017
6022017
FANTOM5 CAGE profiles of human and mouse samples
S Noguchi, T Arakawa, S Fukuda, M Furuno, A Hasegawa, F Hori, ...
Scientific data 4 (1), 1-10, 2017
2562017
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
J Severin, M Lizio, J Harshbarger, N Bertin, ARR Forrest
NATURE BIOTECHNOLOGY, 2014
1872014
Functional annotation of human long noncoding RNAs via molecular phenotyping
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...
Genome research 30 (7), 1060-1072, 2020
1522020
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
1492014
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ...
Nucleic acids research, gkw995, 2016
1122016
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs
I Abugessaisa, JA Ramilowski, M Lizio, J Severin, A Hasegawa, ...
Nucleic acids research 49 (D1), D892-D898, 2021
892021
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki
I Abugessaisa, H Shimoji, S Sahin, A Kondo, J Harshbarger, M Lizio, ...
Database 2016, baw105, 2016
832016
FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies
I Abugessaisa, S Noguchi, A Hasegawa, J Harshbarger, A Kondo, M Lizio, ...
Scientific Data 4 (1), 1-10, 2017
712017
DEIVA: a web application for interactive visual analysis of differential gene expression profiles
J Harshbarger, A Kratz, P Carninci
BMC genomics 18, 1-5, 2017
322017
Human genome meeting 2016: Houston, TX, USA. 28 February-2 March 2016
AK Srivastava, Y Wang, R Huang, C Skinner, T Thompson, L Pollard, ...
Human genomics 10, 1-40, 2016
232016
Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human
JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ...
Nature communications 7, 2016
172016
’t Hoen PA, Tatum Z, Thompson M, Toyoda T, Wright DW, Daub CO, Itoh M, Carninci P, Hayashizaki Y, Forrest AR, Kawaji H. Gateways to the FANTOM5 promoter level mammalian …
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome Biol 16 (22), 10.1186, 2015
152015
Monitoring transcription initiation activities in rat and dog
M Lizio, AK Mukarram, M Ohno, S Watanabe, M Itoh, A Hasegawa, ...
Scientific Data 4 (1), 1-13, 2017
72017
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