A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1780 | 2014 |
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017 | 1051 | 2017 |
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16, 1-14, 2015 | 897 | 2015 |
The BioMart community portal: an innovative alternative to large, centralized data repositories D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ... Nucleic acids research 43 (W1), W589-W598, 2015 | 836 | 2015 |
A draft network of ligand–receptor-mediated multicellular signalling in human JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ... Nature communications 6 (1), 7866, 2015 | 803 | 2015 |
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015 | 628 | 2015 |
An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872-878, 2017 | 602 | 2017 |
FANTOM5 CAGE profiles of human and mouse samples S Noguchi, T Arakawa, S Fukuda, M Furuno, A Hasegawa, F Hori, ... Scientific data 4 (1), 1-10, 2017 | 256 | 2017 |
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU J Severin, M Lizio, J Harshbarger, N Bertin, ARR Forrest NATURE BIOTECHNOLOGY, 2014 | 187 | 2014 |
Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 152 | 2020 |
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ... Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014 | 149 | 2014 |
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ... Nucleic acids research, gkw995, 2016 | 112 | 2016 |
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs I Abugessaisa, JA Ramilowski, M Lizio, J Severin, A Hasegawa, ... Nucleic acids research 49 (D1), D892-D898, 2021 | 89 | 2021 |
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki I Abugessaisa, H Shimoji, S Sahin, A Kondo, J Harshbarger, M Lizio, ... Database 2016, baw105, 2016 | 83 | 2016 |
FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies I Abugessaisa, S Noguchi, A Hasegawa, J Harshbarger, A Kondo, M Lizio, ... Scientific Data 4 (1), 1-10, 2017 | 71 | 2017 |
DEIVA: a web application for interactive visual analysis of differential gene expression profiles J Harshbarger, A Kratz, P Carninci BMC genomics 18, 1-5, 2017 | 32 | 2017 |
Human genome meeting 2016: Houston, TX, USA. 28 February-2 March 2016 AK Srivastava, Y Wang, R Huang, C Skinner, T Thompson, L Pollard, ... Human genomics 10, 1-40, 2016 | 23 | 2016 |
Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ... Nature communications 7, 2016 | 17 | 2016 |
’t Hoen PA, Tatum Z, Thompson M, Toyoda T, Wright DW, Daub CO, Itoh M, Carninci P, Hayashizaki Y, Forrest AR, Kawaji H. Gateways to the FANTOM5 promoter level mammalian … M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome Biol 16 (22), 10.1186, 2015 | 15 | 2015 |
Monitoring transcription initiation activities in rat and dog M Lizio, AK Mukarram, M Ohno, S Watanabe, M Itoh, A Hasegawa, ... Scientific Data 4 (1), 1-13, 2017 | 7 | 2017 |