Casey Bergman

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Susan CelnikerVerified email at lbl.gov
Martin GernerUniversity of ManchesterVerified email at postgrad.manchester.ac.uk
Goran NenadicDepartment of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Hadi QuesnevilleINRAE, Directorate for Open Science, Paris, FranceVerified email at versailles.inra.fr
Raquel LinheiroResearch Associate in bioinformatics, The University of ManchesterVerified email at manchester.ac.uk
Gerald M. RubinJanelia Research Campus/HHMIVerified email at janelia.hhmi.org
Dave T. GerrardLecturer in Evolutionary Genomics, University of ManchesterVerified email at manchester.ac.uk
Guilherme B. DiasBioinformatician, NBIS/SciLife Lab, Uppsala University, SwedenVerified email at scilifelab.se
Maximilian HaeusslerUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
David J. GarfinkelUniversity of GeorgiaVerified email at uga.edu
Shunhua HanBioinformatics Scientist, Illumina IncVerified email at illumina.com
Steve GalloCenter for Computational Research, University At BuffaloVerified email at ccr.buffalo.edu
Andrew G ClarkMolecular Biology and Genetics/ Computational Biology, Cornell UniversityVerified email at cornell.edu
Preston BastingGraduate Student, University of GeorgiaVerified email at uga.edu
Joshua S KaminkerSenior Scientist and Director, Bioinformatics and Computational Biology, GenentechVerified email at gene.com
Robert SvirskasJanelia Research Campus, Howard Hughes Medical InstituteVerified email at janelia.hhmi.org
Suzanna LewisLawrence Berkeley National LaboratoryVerified email at lbl.gov
Uwe OhlerProfessor, Max-Delbruck-Center & Humboldt University Berlin / Adjunct Professor, Duke UniversityVerified email at mdc-berlin.de
Pavel TomancakResearch Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in DresdenVerified email at mpi-cbg.de
David CorcoranUniversity of North CarolinaVerified email at unc.edu

Casey Bergman

Associate Professor, Department of Genetics & Institute of Bioinformatics, University of Georgia

Verified email at uga.edu - Homepage

computational biology genomics bioinformatics evolutionary biology transposable elements


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Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-218, 2007	2271	2007
The Drosophila melanogaster Genetic Reference Panel TF Mackay, S Richards, EA Stone, A Barbadilla, JF Ayroles, D Zhu, ... Nature 482, 173-178, 2012	1825	2012
Population genomics of domestic and wild yeasts G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ... Nature 458 (7236), 337-341, 2009	1695	2009
Evidence for stabilizing selection in a eukaryotic enhancer element MZ Ludwig, C Bergman, NH Patel, M Kreitman Nature 403 (6769), 564-567, 2000	670	2000
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JS Kaminker, CM Bergman, B Kronmiller, J Carlson, R Svirskas, S Patel, ... Genome biology 3, 1-20, 2002	654	2002
Gene expression divergence recapitulates the developmental hourglass model AT Kalinka, KM Varga, DT Gerrard, S Preibisch, DL Corcoran, J Jarrells, ... Nature 468 (7325), 811-814, 2010	488	2010
Combined evidence annotation of transposable elements in genome sequences H Quesneville, CM Bergman, O Andrieu, D Autard, D Nouaud, ... PLoS computational biology 1 (2), e22, 2005	444	2005
LINNAEUS: a species name identification system for biomedical literature M Gerner, G Nenadic, CM Bergman BMC bioinformatics 11, 1-17, 2010	417	2010
ORegAnno: an open-access community-driven resource for regulatory annotation OL Griffith, SB Montgomery, B Bernier, B Chu, K Kasaian, S Aerts, ... Nucleic acids research 36 (suppl_1), D107-D113, 2007	321	2007
Discovering and detecting transposable elements in genome sequences CM Bergman, H Quesneville Briefings in bioinformatics 8 (6), 382-392, 2007	300	2007
Functional Evolution of a cis-Regulatory Module MZ Ludwig, A Palsson, E Alekseeva, CM Bergman, J Nathan, M Kreitman PLoS biology 3 (4), e93, 2005	257	2005
Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster CM Bergman, JW Carlson, SE Celniker Bioinformatics 21 (8), 1747-1749, 2005	233	2005
Principles of genome evolution in the Drosophila melanogaster species group JM Ranz, D Maurin, YS Chan, M Von Grotthuss, LDW Hillier, J Roote, ... PLoS biology 5 (6), e152, 2007	231	2007
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome CM Bergman, H Quesneville, D Anxolabéhère, M Ashburner Genome biology 7, 1-21, 2006	225	2006
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila SM Gallo, DT Gerrard, D Miner, M Simich, B Des Soye, CM Bergman, ... Nucleic acids research 39 (suppl_1), D118-D123, 2010	222	2010
Drosophila innate immunity: regional and functional specialization of prophenoloxidases JP Dudzic, S Kondo, R Ueda, CM Bergman, B Lemaitre BMC biology 13, 1-16, 2015	218	2015
Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster MF Richardson, LA Weinert, JJ Welch, RS Linheiro, MM Magwire, ... PLoS Genet 8 (12), e1003129, 2012	215	2012
Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences CM Bergman, M Kreitman Genome Research 11 (8), 1335-1345, 2001	210	2001
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, ... Genome Biology 3 (12), 1-0086.20, 2002	171	2002
Benchmarking tools for the alignment of functional noncoding DNA DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen BMC bioinformatics 5, 1-17, 2004	167	2004

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