David van Dijk
David van Dijk
Assistant Professor, Yale University
Verified email at - Homepage
Cited by
Cited by
Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
D Van Dijk, R Sharma, J Nainys, K Yim, P Kathail, A Carr, C Burdziak, ...
Cell 174 (3), 716-729.e27, 2018
Neuroinvasion of SARS-CoV-2 in human and mouse brain
E Song, C Zhang, B Israelow, A Lu-Culligan, AV Prado, S Skriabine, P Lu, ...
Journal of Experimental Medicine 218 (3), e20202135, 2021
Visualizing structure and transitions in high-dimensional biological data
KR Moon, D Van Dijk, Z Wang, S Gigante, DB Burkhardt, WS Chen, K Yim, ...
Nature biotechnology 37 (12), 1482-1492, 2019
Genome-wide CRISPR screens reveal host factors critical for SARS-CoV-2 infection
J Wei, MM Alfajaro, PC DeWeirdt, RE Hanna, WJ Lu-Culligan, WL Cai, ...
Cell 184 (1), 76-91. e13, 2021
Distinguishing features of Long COVID identified through immune profiling
J Klein, J Wood, JR Jaycox, RM Dhodapkar, P Lu, JR Gehlhausen, ...
Nature 623 (7985), 139-148, 2023
Development and validation of the quick COVID-19 severity index: a prognostic tool for early clinical decompensation
AD Haimovich, NG Ravindra, S Stoytchev, HP Young, FP Wilson, ...
Annals of emergency medicine 76 (4), 442-453, 2020
A neutrophil activation signature predicts critical illness and mortality in COVID-19
ML Meizlish, AB Pine, JD Bishai, G Goshua, ER Nadelmann, M Simonov, ...
Blood advances 5 (5), 1164-1177, 2021
Exploring single-cell data with deep multitasking neural networks
M Amodio, D Van Dijk, K Srinivasan, WS Chen, H Mohsen, KR Moon, ...
Nature methods 16 (11), 1139-1145, 2019
PD-1 marks dysfunctional regulatory T cells in malignant gliomas
DE Lowther, BA Goods, LE Lucca, BA Lerner, K Raddassi, D van Dijk, ...
JCI insight 1 (5), 2016
Publication metrics and success on the academic job market
D Van Dijk, O Manor, LB Carey
Current Biology 24 (11), R516-R517, 2014
Immune dysregulation and autoreactivity correlate with disease severity in SARS-CoV-2-associated multisystem inflammatory syndrome in children
A Ramaswamy, NN Brodsky, TS Sumida, M Comi, H Asashima, ...
Immunity 54 (5), 1083-1095. e7, 2021
Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes
NG Ravindra, MM Alfajaro, V Gasque, NC Huston, H Wan, K Szigeti-Buck, ...
PLoS biology 19 (3), e3001143, 2021
MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data
D Dijk, J Nainys, R Sharma, P Kaithail, AJ Carr, KR Moon, L Mazutis, ...
BioRxiv, 111591, 2017
Promoter sequence determines the relationship between expression level and noise
LB Carey, D van Dijk, PMA Sloot, JA Kaandorp, E Segal
PLoS biology 11 (4), e1001528, 2013
Manifold learning-based methods for analyzing single-cell RNA-sequencing data
KR Moon, JS Stanley III, D Burkhardt, D van Dijk, G Wolf, S Krishnaswamy
Current Opinion in Systems Biology 7, 36-46, 2018
Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19
A Unterman, TS Sumida, N Nouri, X Yan, AY Zhao, V Gasque, JC Schupp, ...
Nature communications 13 (1), 440, 2022
Circulating markers of angiogenesis and endotheliopathy in COVID-19
AB Pine, ML Meizlish, G Goshua, CH Chang, H Zhang, J Bishai, P Bahel, ...
Pulmonary Circulation 10 (4), 2045894020966547, 2020
Quantifying the effect of experimental perturbations at single-cell resolution
DB Burkhardt, JS Stanley III, A Tong, AL Perdigoto, SA Gigante, ...
Nature biotechnology 39 (5), 619-629, 2021
Trajectorynet: A dynamic optimal transport network for modeling cellular dynamics
A Tong, J Huang, G Wolf, D Van Dijk, S Krishnaswamy
International conference on machine learning, 9526-9536, 2020
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
E Sharon, D van Dijk, Y Kalma, L Keren, O Manor, Z Yakhini, E Segal
Genome research 24 (10), 1698-1706, 2014
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