Julia K. Varga

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Ora Schueler-FurmanHebrew University, Jerusalem, IsraelVerified email at mail.huji.ac.il
Gábor E. TusnádyInstitute of Enzymology, RCNSVerified email at ttk.mta.hu
Alisa KhramushinPostdoc, EPFL, LausanneVerified email at epfl.ch
Tomer TsabanMD-PhD student, Hebrew University of JerusalemVerified email at mail.huji.ac.il
Orly AvrahamPostdoctoral fellow, The lab of Prof. Ora Schueler-Furman, the Hebrew University of JerusalemVerified email at mail.huji.ac.il
Laszlo DobsonResearch Centre for Natural Sciences/Semmelweis University (ex-EMBL)Verified email at embl.de
Lilla TuriákResearch Centre for Natural SciencesVerified email at ttk.hu
Katalin Fölkl MedzihradszkyUCSF; BRCVerified email at brc.mta.hu
Gergely RónaGroup leader at IMLS, HUN-REN RCNS; Adjunct Assistant Professor at NYU Grossman School of MedicineVerified email at nyulangone.org
Beata G. VertessyProfessor, EI RCNS HUN-REN, BME HungaryVerified email at kutatok.org
gergely szakacsInstitute of EnzymologyVerified email at biomembrane.hu
István ReményiPhD Student at ELTE Faculty of Informatics | Lead Engineer at Bosch HungaryVerified email at inf.elte.hu
Éva VargaResearch fellow at Institute of Enzymology, RCNS, HungaryVerified email at ttk.hu
Péter István KulcsárPostdoctoral Researcher, Schwank lab, IPT, University of ZurichVerified email at uzh.ch
András TálasUniversity of ZurichVerified email at uzh.ch
Eszter Tóth, PhDResearch fellow at Institute of Enzymology, RCNS, HASVerified email at ttk.mta.hu
Zoltan GyorgypalResearch Scientist, Biological Research Centre, Szeged, HungaryVerified email at brc.hu
Ervin Welkersenior scientist Biological Research Center of the Hungarian Academy of SciencesVerified email at brc.mta.hu
Ferenc Péter PachTritoo InformaticsVerified email at tritoo.hu
Carol FierkeTexas A&M UniversityVerified email at tamu.edu

Julia K. Varga

Hebrew University of Jerusalem

Verified email at mail.huji.ac.il

bioinformatics short linear motifs peptides docking


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Harnessing protein folding neural networks for peptide–protein docking T Tsaban, JK Varga, O Avraham, Z Ben-Aharon, A Khramushin, ... Nature communications 13 (1), 176, 2022	172	2022
Identification of extracellular segments by mass spectrometry improves topology prediction of transmembrane proteins T Langó, G Róna, É Hunyadi-Gulyás, L Turiák, J Varga, L Dobson, ... Scientific Reports 7 (1), 42610, 2017	17	2017
Matching protein surface structural patches for high-resolution blind peptide docking A Khramushin, Z Ben-Aharon, T Tsaban, JK Varga, O Avraham, ... Proceedings of the National Academy of Sciences 119 (18), e2121153119, 2022	16*	2022
TSTMP: target selection for structural genomics of human transmembrane proteins J Varga, L Dobson, I Reményi, GE Tusnády Nucleic Acids Research 45 (D1), D325-D330, 2017	15	2017
TMCrys: predict propensity of success for transmembrane protein crystallization JK Varga, GE Tusnady Bioinformatics 34 (18), 3126-3130, 2018	13	2018
A method for characterizing Cas9 variants via a one-million target sequence library of self-targeting sgRNAs A Tálas, K Huszár, PI Kulcsár, JK Varga, É Varga, E Tóth, Z Welker, ... Nucleic Acids Research 49 (6), e31-e31, 2021	12	2021
Structure-based prediction of HDAC6 substrates validated by enzymatic assay reveals determinants of promiscuity and detects new potential substrates JK Varga, K Diffley, KR Welker Leng, CA Fierke, O Schueler-Furman Scientific reports 12 (1), 1-15, 2022	8	2022
TOPDOM: database of conservatively located domains and motifs in proteins J Varga, L Dobson, GE Tusnády Bioinformatics 32 (17), 2725-2726, 2016	7	2016
Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation CY Lee, D Hubrich, JK Varga, C Schäfer, M Welzel, E Schumbera, ... Molecular Systems Biology 20 (2), 75-97, 2024	6	2024
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study H Schweke, Q Xu, G Tauriello, L Pantolini, T Schwede, F Cazals, ... Proteomics 23 (17), 2200323, 2023	5	2023
Structural study of UFL1‐UFC1 interaction uncovers the role of UFL1 N‐terminal helix in ufmylation S Banerjee, JK Varga, M Kumar, G Zoltsman, S Rotem‐Bamberger, ... EMBO reports 24 (12), e56920, 2023	4*	2023
Partial proteolysis improves the identification of the extracellular segments of transmembrane proteins by surface biotinylation T Langó, ZG Pataki, L Turiák, A Ács, JK Varga, G Várady, N Kucsma, ... Scientific Reports 10 (1), 1-11, 2020	4	2020
The TMCrys server for supporting crystallization of transmembrane proteins JK Varga, GE Tusnády Bioinformatics 35 (20), 4203, 2019	2	2019
Substrate recognition principles for the PP2A-B55 protein phosphatase T Kruse, DH Garvanska, J Varga, W Garland, B McEwan, JB Hein, ... bioRxiv, 2024.02. 10.579793, 2024	1	2024
Unbiased phenotype and genotype matching maximizes gene discovery and diagnostic yield J Rips, O Halstuk, A Fuchs, Z Lang, T Sido, S Gershon-Naamat, ... Genetics in Medicine 26 (4), 101068, 2024		2024
Binding of SARS-CoV-2 nucleocapsid protein to uninfected epithelial cells induces antibody-mediated complement deposition J Fahoum, M Billan, JK Varga, D Padawer, M Elgrably-Weiss, P Basu, ... bioRxiv, 2024.03. 17.585388, 2024		2024
Who binds better? Let Alphafold2 decide! JK Varga, O Schueler‐Furman Angewandte Chemie International Edition 62 (28), e202303526, 2023		2023

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