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Chen Li
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GlycoMine: a machine learning-based approach for predicting N-, C-and O-linked glycosylation in the human proteome
F Li*, C Li*, M Wang, GI Webb, Y Zhang, JC Whisstock, J Song
Bioinformatics 31 (9), 1411-1419, 2015
1492015
Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome
F Li, C Li, TT Marquez-Lago, A Leier, T Akutsu, AW Purcell, AI Smith, ...
Bioinformatics 1, 9, 2018
1292018
A subset of HLA-I peptides are not genomically templated: Evidence for cis-and trans-spliced peptide ligands
P Faridi, C Li, SH Ramarathinam, JP Vivian, PT Illing, NA Mifsud, R Ayala, ...
Science immunology 3 (28), eaar3947, 2018
1242018
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites
Z Chen, X Liu, F Li, C Li, T Marquez-Lago, A Leier, T Akutsu, GI Webb, ...
Briefings in bioinformatics 20 (6), 2267-2290, 2019
882019
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods
F Li*, Y Wang*, C Li*, TT Marquez-Lago, A Leier, ND Rawlings, G Haffari, ...
Briefings in bioinformatics 20 (6), 2150-2166, 2019
692019
OcVFDT: one-class very fast decision tree for one-class classification of data streams
C Li, Y Zhang, X Li
KDD 2009 Workshop on Knowledge Discovery from Sensor Data, 79-86, 2009
672009
GlycoMine struct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features
F Li*, C Li*, J Revote, Y Zhang, GI Webb, J Li, J Song, T Lithgow
Scientific reports 6 (1), 1-16, 2016
632016
Positive-unlabelled learning of glycosylation sites in the human proteome
F Li, Y Zhang, AW Purcell, GI Webb, KC Chou, T Lithgow, C Li*, J Song*
BMC bioinformatics 20 (1), 1-17, 2019
602019
Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI
Y An*, J Wang*, C Li*, A Leier, T Marquez-Lago, J Wilksch, Y Zhang, ...
Briefings in bioinformatics 19 (1), 148-161, 2018
532018
iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization
Z Chen*, P Zhao*, C Li*, F Li, D Xiang, YZ Chen, T Akutsu, RJ Daly, ...
Nucleic Acid Research, 2021
372021
SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems
Y An, J Wang, C Li, J Revote, Y Zhang, T Naderer, M Hayashida, T Akutsu, ...
Scientific reports 7 (1), 1-10, 2017
332017
Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma
P Faridi, K Woods, S Ostrouska, C Deceneux, R Aranha, D Duscharla, ...
Cancer Immunology Research 8 (10), 2020
292020
SPAR: a random forest-based predictor for self-interacting proteins with fine-grained domain information
X Liu, S Yang, C Li, Z Zhang, J Song
Amino acids 48 (7), 1655-1665, 2016
282016
The α-importome of mammalian germ cell maturation provides novel insights for importin biology
A Arjomand, MA Baker, C Li, AM Buckle, DA Jans, KL Loveland, ...
The FASEB Journal 28 (8), 3480-3493, 2014
222014
Regulating polymyxin resistance in Gram-negative bacteria: roles of two-component systems PhoPQ and PmrAB
J Huang, C Li, J Song, T Velkov, L Wang, Y Zhu, J Li
Future Microbiology 15 (6), 445-459, 2020
202020
Response to Comment on “A subset of HLA-I peptides are not genomically templated: evidence for cis-and trans-spliced peptide ligands”
P Faridi, C Li, SH Ramarathinam, PT Illing, NA Mifsud, R Ayala, J Song, ...
Science immunology 4 (38), eaaw8457, 2019
192019
Periscope: quantitative prediction of soluble protein expression in the periplasm of Escherichia coli
CCH Chang, C Li, GI Webb, BT Tey, J Song, RN Ramanan
Scientific reports 6 (1), 1-11, 2016
192016
MetalExplorer, a Bioinformatics Tool for the Improved Prediction of Eight Types of Metal-binding Sites Using a Random Forest Algorithm with Two-step Feature Selection
J Song*, C Li*, C Zheng, J Revote, Z Zhang, GI Webb
Current Bioinformatics 11, 2016
192016
Computational characterization of parallel dimeric and trimeric coiled-coils using effective amino acid indices
C Li, XF Wang, Z Chen, Z Zhang, J Song
Molecular BioSystems 11 (2), 354-360, 2015
192015
Learning from data streams with only positive and unlabeled data
X Qin, Y Zhang, C Li, X Li
Journal of Intelligent Information Systems 40 (3), 405-430, 2013
192013
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Articles 1–20