Daniel Sage

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Michael UnserProfessor, Biomedical Imaging Group, Ecole Polytechnique Fédérale de Lausanne (EPFL), SwitzerlandVerified email at epfl.ch
DibnerUniversity of GenevaVerified email at hcuge.ch
Alessandra GriffaUNIGE & EPFL, SwitzerlandVerified email at epfl.ch
Dimitri Van De VilleAssociate Professor of Bioengineering, EPF Lausanne and University of GenevaVerified email at epfl.ch
Nikos StergiopulosProfessor of BioengineeringVerified email at epfl.ch
Zsuzsanna PüspökiMirrakoi SAVerified email at mirrakoi.com
Thomas PengoDirector of Research Informatics, U of MinnesotaVerified email at umn.edu
Estibaliz Gómez-de-MariscalPostdoc Henriques Lab, Instituto Gulbenkian de Ciência, Oeiras, PortugalVerified email at igc.gulbenkian.pt
Thanh-an PhamMassachusetts Institute of Technology (MIT)Verified email at mit.edu
Carlijn BoutenEindhoven University of TechnologyVerified email at tue.nl
Aurelien F. StalderSiemens HealthineersVerified email at siemens-healthineers.com
Carlos García-López-de-HaroVerified email at alumnos.uc3m.es
Suliana ManleyProfessor of Physics, EPFLVerified email at epfl.ch
Daniel Schmitterdanielschmitter.meVerified email at danielschmitter.me
Susan M. GasserFriedrich Miescher Institute for Biomedical ResearchVerified email at fmi.ch
Daniel WüstnerProfessor, University of Southern DenmarkVerified email at bmb.sdu.dk
Arrate Muñoz BarrutiaProfessor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio MarañónVerified email at ing.uc3m.es
Séamus HoldenAssociate Professor, University of Warwick, UKVerified email at warwick.ac.uk
Ricardo HenriquesGroup Leader at Instituto Gulbenkian de Ciência and Honorary Professor at UCL (LMCB)Verified email at igc.gulbenkian.pt
Jean-Baptiste SibaritaVerified email at u-bordeaux.fr

Daniel Sage

Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland

Verified email at epfl.ch - Homepage

Bioimage informatics Computational bioimaging bioimage analysis biological image processing super-resolution microscopy


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Experimental investigation of collagen waviness and orientation in the arterial adventitia using confocal laser scanning microscopy R Rezakhaniha, A Agianniotis, JTC Schrauwen, A Griffa, D Sage, ... Biomechanics and modeling in mechanobiology 11, 461-473, 2012	1019	2012
A snake-based approach to accurate determination of both contact points and contact angles AF Stalder, G Kulik, D Sage, L Barbieri, P Hoffmann Colloids and surfaces A: physicochemical and engineering aspects 286 (1-3 …, 2006	947	2006
Low-bond axisymmetric drop shape analysis for surface tension and contact angle measurements of sessile drops AF Stalder, T Melchior, M Müller, D Sage, T Blu, M Unser Colloids and Surfaces A: Physicochemical and Engineering Aspects 364 (1-3 …, 2010	788	2010
Automatic tracking of individual fluorescence particles: application to the study of chromosome dynamics D Sage, FR Neumann, F Hediger, SM Gasser, M Unser IEEE transactions on image processing 14 (9), 1372-1383, 2005	555	2005
DeconvolutionLab2: An open-source software for deconvolution microscopy D Sage, L Donati, F Soulez, D Fortun, G Schmit, A Seitz, R Guiet, ... Methods 115, 28-41, 2017	470	2017
Complex wavelets for extended depth‐of‐field: A new method for the fusion of multichannel microscopy images B Forster, D Van De Ville, J Berent, D Sage, M Unser Microscopy Research and technique 65 (1‐2), 33-42, 2004	457	2004
Quantitative evaluation of software packages for single-molecule localization microscopy D Sage, H Kirshner, T Pengo, N Stuurman, J Min, S Manley, M Unser Nature methods 12 (8), 717-724, 2015	453	2015
Transforms and operators for directional bioimage analysis: a survey Z Püspöki, M Storath, D Sage, M Unser Focus on bio-image informatics, 69-93, 2016	390	2016
Fast Bilateral Filtering Using Trigonometric Range Kernels KN Chaudhury, D Sage, M Unser IEEE transactions on image processing 20 (12), 3376-3382, 2011	296	2011
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software D Sage, TA Pham, H Babcock, T Lukes, T Pengo, J Chao, R Velmurugan, ... Nature methods 16 (5), 387-395, 2019	287	2019
3‐D PSF fitting for fluorescence microscopy: implementation and localization application H Kirshner, F Aguet, D Sage, M Unser Journal of microscopy 249 (1), 13-25, 2013	287	2013
Effect of aging on elastin functionality in human cerebral arteries E Fonck, GG Feigl, J Fasel, D Sage, M Unser, DA Rüfenacht, ... Stroke 40 (7), 2552-2556, 2009	278	2009
Phosphorylation does not prompt, nor prevent, the formation of α-synuclein toxic species in a rat model of Parkinson's disease S Azeredo da Silveira, BL Schneider, C Cifuentes-Diaz, D Sage, ... Human molecular genetics 18 (5), 872-887, 2009	253	2009
Multiresolution monogenic signal analysis using the Riesz–Laplace wavelet transform M Unser, D Sage, D Van De Ville IEEE Transactions on Image Processing 18 (11), 2402-2418, 2009	246	2009
PixFRET, an ImageJ plug‐in for FRET calculation that can accommodate variations in spectral bleed‐throughs JN Feige, D Sage, W Wahli, B Desvergne, L Gelman Microscopy research and technique 68 (1), 51-58, 2005	238	2005
Predicting stem cell fate changes by differential cell cycle progression patterns M Roccio, D Schmitter, M Knobloch, Y Okawa, D Sage, MP Lutolf Development 140 (2), 459-470, 2013	186	2013
Circadian gene expression is resilient to large fluctuations in overall transcription rates C Dibner, D Sage, M Unser, C Bauer, T d'Eysmond, F Naef, U Schibler The EMBO journal 28 (2), 123-134, 2009	167	2009
DeepImageJ: A user-friendly environment to run deep learning models in ImageJ E Gómez-de-Mariscal, C García-López-de-Haro, W Ouyang, L Donati, ... Nature Methods 18 (10), 1192-1195, 2021	157*	2021
Teaching image-processing programming in Java D Sage, M Unser IEEE Signal Processing Magazine 20 (6), 43-52, 2003	122	2003
Autonomous and self-sustained circadian oscillators displayed in human islet cells P Pulimeno, T Mannic, D Sage, L Giovannoni, P Salmon, S Lemeille, ... Diabetologia 56, 497-507, 2013	116	2013

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