| Short-Chain Fatty Acid Production by Gut Microbiota from Children with Obesity Differs According to Prebiotic Choice and Bacterial Community Composition ZC Holmes, JD Silverman, HK Dressman, Z Wei, EP Dallow, ... mBio 11 (4), 2020 | 62 | 2020 |
| Genotypic and phenotypic diversity among human isolates of Akkermansia muciniphila B Becken, L Davey, DR Middleton, KD Mueller, A Sharma, ZC Holmes, ... MBio 12 (3), 10.1128/mbio. 00478-21, 2021 | 57 | 2021 |
| Conserved anti-inflammatory effects and sensing of butyrate in zebrafish PM Cholan, A Han, BR Woodie, M Watchon, ARM Kurz, AS Laird, ... Gut microbes 12 (1), 1824563, 2020 | 50 | 2020 |
| Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake ZC Holmes, MM Villa, HK Durand, S Jiang, EP Dallow, BL Petrone, ... Microbiome 10 (1), 114, 2022 | 47 | 2022 |
| Bayesian multinomial logistic normal models through marginally latent matrix-T processes JD Silverman, K Roche, ZC Holmes, LA David, S Mukherjee Journal of Machine Learning Research 23 (7), 1-42, 2022 | 38 | 2022 |
| Toxoplasma gondii Toc75 Functions in Import of Stromal but not Peripheral Apicoplast Proteins L Sheiner, JD Fellows, J Ovciarikova, CF Brooks, S Agrawal, ZC Holmes, ... Traffic 16 (12), 1254-1269, 2015 | 38 | 2015 |
| Consistency of trematode infection prevalence in host populations across large spatial and temporal scales JE Byers, ZC Holmes, AMH Blakeslee Ecology 97 (7), 1643-1649, 2016 | 26 | 2016 |
| Contrasting complexity of adjacent habitats influences the strength of cascading predatory effects JE Byers, ZC Holmes, JC Malek Oecologia 185, 107-117, 2017 | 24 | 2017 |
| Ecological memory of prior nutrient exposure in the human gut microbiome J Letourneau, ZC Holmes, EP Dallow, HK Durand, S Jiang, VM Carrion, ... The ISME journal 16 (11), 2479-2490, 2022 | 17 | 2022 |
| A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression LE Davey, PN Malkus, M Villa, L Dolat, ZC Holmes, J Letourneau, ... Nature Microbiology 8 (8), 1450-1467, 2023 | 15 | 2023 |
| Prebiotic galactooligosaccharides interact with mouse gut microbiota to attenuate acute graft-versus-host disease ZC Holmes, H Tang, C Liu, A Bush, BC Neubert, Y Jiao, M Covington, ... Blood, The Journal of the American Society of Hematology 140 (21), 2300-2304, 2022 | 11 | 2022 |
| Genotypic and phenotypic diversity among human isolates of Akkermansia muciniphila. mBio 12: e00478-21 B Becken, L Davey, DR Middleton, KD Mueller, A Sharma, ZC Holmes, ... | 9 | 2021 |
| Stronger positive association between an invasive crab and a native intertidal ecosystem engineer with increasing wave exposure JT Wright, ZC Holmes, JE Byers Marine environmental research 142, 124-129, 2018 | 6 | 2018 |
| Short-chain fatty acid production by gut microbiota from children with obesity differs according to prebiotic choice and bacterial community composition. mBio. 2020; 11 (4 … ZC Holmes, JD Silverman, HK Dressman, Z Wei, EP Dallow, ... External Resources Crossref (DOI), 2012 | 5 | 2012 |
| Bayesian Multinomial Logistic Normal Models through Marginally Latent Matrix-T Processes. arXiv e-prints. 2019; p JD Silverman, K Roche, ZC Holmes, LA David, S Mukherjee arXiv preprint arXiv:1903.11695, 0 | 5 | |
| Mucin foraging enables Akkermansia muciniphila to compete against other microbes in the gut and to modulate host sterol biosynthesis L Davey, P Malkus, M Villa, L Dolat, Z Holmes, J Letourneau, E Ansaldo, ... | 4 | 2022 |
| Use of the Ion Torrent PGM for Determining the Genomic Sequences of Francisella and Coxiella-Like Endosymbionts and Rickettsia Directly from Hard Ticks GA Dasch, A Ramaiah, ZC Holmes, ML Zambrano, TB Shirey Contemporary Acarology: 2017, 1-35, 2019 | 2 | 2019 |
| Habitual dietary fiber intake influences the response to prebiotic supplementation ZC Holmes, MM Villa, HK Durand, S Jiang, EP Dallow, BL Petrone, ... | | 2023 |
| Individual Variation in Prebiotic Response. LA David, ZC Holmes, MM Villa, HK Durand, S Jiang, EP Dallow, ... IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL 57 (SUPPL 1), S11-S11, 2021 | | 2021 |
| Use of the ion torrent PGM for characterizing the microbiome of Oklahoma Amblyomma americanum (Ixodida: Ixodidae) ZCC Holmes, BT Shirey, ML Zambrano, GA Dasch, SA Ruskoski 2016 International Congress of Entomology, 2016 | | 2016 |
