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Dr. Miriam Menzel
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A Jones matrix formalism for simulating three-dimensional polarized light imaging of brain tissue
M Menzel, K Michielsen, H De Raedt, J Reckfort, K Amunts, M Axer
Journal of the Royal Society Interface 12 (111), 20150734, 2015
552015
Understanding fiber mixture by simulation in 3D polarized light imaging
M Dohmen, M Menzel, H Wiese, J Reckfort, F Hanke, U Pietrzyk, K Zilles, ...
NeuroImage 111, 464-475, 2015
492015
Diattenuation Imaging reveals different brain tissue properties
M Menzel, M Axer, K Amunts, H De Raedt, K Michielsen
Scientific reports 9 (1), 1939, 2019
432019
Diattenuation of brain tissue and its impact on 3D polarized light imaging
M Menzel, J Reckfort, D Weigand, H Köse, K Amunts, M Axer
Biomedical optics express 8 (7), 3163-3197, 2017
322017
Toward a high-resolution reconstruction of 3D nerve fiber architectures and crossings in the brain using light scattering measurements and finite-difference time-domain simulations
M Menzel, M Axer, H De Raedt, I Costantini, L Silvestri, FS Pavone, ...
Physical Review X 10 (2), 021002, 2020
282020
Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution
M Menzel, JA Reuter, D Gräßel, M Huwer, P Schlömer, K Amunts, M Axer
NeuroImage 233, 117952, 2021
242021
Autofluorescence enhancement for label-free imaging of myelinated fibers in mammalian brains
I Costantini, E Baria, M Sorelli, F Matuschke, F Giardini, M Menzel, ...
Scientific reports 11 (1), 8038, 2021
242021
Finite-difference time-domain simulation for three-dimensional polarized light imaging
M Menzel, M Axer, H De Raedt, K Michielsen
Brain-Inspired Computing: Second International Workshop, BrainComp 2015 …, 2016
112016
Scatterometry Measurements with Scattered Light Imaging Enable New Insights into the Brain's Nerve Fiber Architecture
M Menzel, M Ritzkowski, JA Reuter, D Gräßel, K Amunts, M Axer
https://arxiv.org/abs/2108.13481, 2021
10*2021
SLIX: A Python package for fully automated evaluation of Scattered Light Imaging measurements on brain tissue
JA Reuter, M Menzel
Journal of Open Source Software 5 (54), 2675, 2020
102020
Coherent Fourier scatterometry reveals nerve fiber crossings in the brain
M Menzel, SF Pereira
Biomedical Optics Express 11 (8), 4735-4758, 2020
82020
Automated computation of nerve fibre inclinations from 3D polarised light imaging measurements of brain tissue
M Menzel, JA Reuter, D Gräßel, I Costantini, K Amunts, M Axer
Scientific reports 12 (1), 4328, 2022
62022
FAConstructor: an interactive tool for geometric modeling of nerve fiber architectures in the brain
JA Reuter, F Matuschke, M Menzel, N Schubert, K Ginsburger, C Poupon, ...
International journal of computer assisted radiology and surgery 14, 1881-1889, 2019
62019
Finite-difference time-domain simulations assisting to reconstruct the brain's nerve fiber architecture by 3D polarized light imaging
M Menzel, K Amunts, S Weßel, KF Michielsen
Fachgruppe Physik, 2018
62018
Imaging crossing fibers in mouse, pig, monkey, and human brain using small-angle X-ray scattering
M Georgiadis, M Menzel, JA Reuter, DE Born, SR Kovacevich, D Alvarez, ...
Acta biomaterialia 164, 317-331, 2023
32023
Using light and X-ray scattering to untangle complex neuronal orientations and validate diffusion MRI
M Menzel, D Gräßel, I Rajkovic, MM Zeineh, M Georgiadis
Elife 12, e84024, 2023
22023
GORDA: Graph-based orientation distribution analysis of SLI scatterometry patterns of nerve fibres
E Vaca, M Menzel, K Amunts, M Axer, T Dickscheid
2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), 1-5, 2022
22022
Finite-difference time-domain simulations of transmission microscopy enable a better interpretation of 3D nerve fiber architectures in the brain
M Menzel, M Axer, H De Raedt, I Costantini, L Silvestri, FS Pavone, ...
arXiv preprint arXiv:1806.07157, 2018
22018
Light scattering measurements enable an improved reconstruction of nerve fiber crossings
M Menzel, M Huwer, P Schlömer, K Amunts, M Axer
Optics and the Brain, BW2C. 3, 2020
12020
Independent component analysis for noise and artifact removal in three-dimensional polarized light imaging
K Benning, M Menzel, JA Reuter, M Axer
International Workshop on Brain-Inspired Computing, 90-102, 2019
12019
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Articles 1–20