Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 8356 | 2012 |
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013 | 5980 | 2013 |
A framework for human microbiome research nature 486 (7402), 215-221, 2012 | 1960 | 2012 |
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ... Genome biology 9 (1), 1-22, 2008 | 1562 | 2008 |
Genome Sequence of Aedes aegypti, a Major Arbovirus Vector V Nene, JR Wortman, D Lawson, B Haas, C Kodira, Z Tu, B Loftus, Z Xi, ... Science 316 (5832), 1718-1723, 2007 | 1223 | 2007 |
The TIGR rice genome annotation resource: improvements and new features S Ouyang, W Zhu, J Hamilton, H Lin, M Campbell, K Childs, ... Nucleic acids research 35 (suppl_1), D883-D887, 2007 | 1148 | 2007 |
Strains, functions and dynamics in the expanded Human Microbiome Project J Lloyd-Price, A Mahurkar, G Rahnavard, J Crabtree, J Orvis, AB Hall, ... Nature 550 (7674), 61-66, 2017 | 796 | 2017 |
A catalog of reference genomes from the human microbiome Human Microbiome Jumpstart Reference Strains Consortium, KE Nelson, ... Science 328 (5981), 994-999, 2010 | 771 | 2010 |
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus ND Fedorova, N Khaldi, VS Joardar, R Maiti, P Amedeo, MJ Anderson, ... PLoS genetics 4 (4), e1000046, 2008 | 535 | 2008 |
Draft genome sequence of the oilseed species Ricinus communis AP Chan, J Crabtree, Q Zhao, H Lorenzi, J Orvis, D Puiu, ... Nature biotechnology 28 (9), 951-956, 2010 | 528 | 2010 |
The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations GC Cerqueira, MB Arnaud, DO Inglis, MS Skrzypek, G Binkley, M Simison, ... Nucleic acids research 42 (D1), D705-D710, 2014 | 279 | 2014 |
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources MB Arnaud, GC Cerqueira, DO Inglis, MS Skrzypek, J Binkley, ... Nucleic acids research 40 (D1), D653-D659, 2012 | 165 | 2012 |
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community MB Arnaud, MC Chibucos, MC Costanzo, J Crabtree, DO Inglis, A Lotia, ... Nucleic acids research 38 (suppl_1), D420-D427, 2010 | 133 | 2010 |
The IGS standard operating procedure for automated prokaryotic annotation K Galens, J Orvis, S Daugherty, HH Creasy, S Angiuoli, O White, ... Standards in genomic sciences 4 (2), 244-251, 2011 | 125 | 2011 |
Identification of the Iron-Responsive Genes of Neisseria gonorrhoeae by Microarray Analysis in Defined Medium TF Ducey, MB Carson, J Orvis, AP Stintzi, DW Dyer Journal of bacteriology 187 (14), 4865-4874, 2005 | 122 | 2005 |
The Staphylococcus aureus NCTC 8325 Genome AF Gillaspy, V Worrell, J Orvis, BA Roe, DW Dyer, JJ Iandolo Gram‐Positive Pathogens, 381-412, 2006 | 121 | 2006 |
Ergatis: a web interface and scalable software system for bioinformatics workflows J Orvis, J Crabtree, K Galens, A Gussman, JM Inman, E Lee, S Nampally, ... Bioinformatics 26 (12), 1488-1492, 2010 | 117 | 2010 |
An integrated genomic and transcriptomic survey of mucormycosis-causing fungi MC Chibucos, S Soliman, T Gebremariam, H Lee, S Daugherty, J Orvis, ... Nature communications 7 (1), 1-11, 2016 | 86 | 2016 |
Characterization of the development of the mouse cochlear epithelium at the single cell level L Kolla, MC Kelly, ZF Mann, A Anaya-Rocha, K Ellis, A Lemons, ... Nature communications 11 (1), 1-16, 2020 | 71 | 2020 |
Transcriptional and Functional Analysis of the Neisseria gonorrhoeae Fur Regulon LA Jackson, TF Ducey, MW Day, JB Zaitshik, J Orvis, DW Dyer Journal of bacteriology 192 (1), 77-85, 2010 | 70 | 2010 |