A comprehensive survey on computational methods of non-coding RNA and disease association prediction X Lei, TB Mudiyanselage, Y Zhang, C Bian, W Lan, N Yu, Y Pan Briefings in Bioinformatics 22 (4), bbaa350, 2021 | 46 | 2021 |
Association predictions of genomics, proteinomics, transcriptomics, microbiome, metabolomics, pathomics, radiomics, drug, symptoms, environment factor, and disease networks: A … Y Pan, X Lei, Y Zhang Medicinal Research Reviews 42 (1), 441-461, 2022 | 45 | 2022 |
CircRNA-disease associations prediction based on metapath2vec++ and matrix factorization Y Zhang, X Lei, Z Fang, Y Pan Big Data Mining and Analytics 3 (4), 280-291, 2020 | 41 | 2020 |
CircR2Disease v2. 0: an updated web server for experimentally validated circRNA–disease associations and its application C Fan, X Lei, J Tie, Y Zhang, FX Wu, Y Pan Genomics, Proteomics and Bioinformatics 20 (3), 435-445, 2022 | 29 | 2022 |
Predicting disease-genes based on network information loss and protein complexes in heterogeneous network X Lei, Y Zhang Information Sciences 479, 386-400, 2019 | 23 | 2019 |
Prediction of disease-associated circRNAs via circRNA–disease pair graph and weighted nuclear norm minimization Y Zhang, X Lei, Y Pan, W Pedrycz Knowledge-Based Systems 214, 106694, 2021 | 21 | 2021 |
Topology potential based seed-growth method to identify protein complexes on dynamic PPI data X Lei, Y Zhang, S Cheng, FX Wu, W Pedrycz Information Sciences 425, 140-153, 2018 | 21 | 2018 |
Drug Repositioning with GraphSAGE and Clustering Constraints Based on Drug and Disease Networks Y Zhang, X Lei, Y Pan, FX Wu Frontiers in Pharmacology, 10.3389/fphar.2022.872785, 2022 | 16 | 2022 |
The prediction of molecular toxicity based on BiGRU and GraphSAGE J Liu, X Lei, Y Zhang, Y Pan Computers in Biology and Medicine 153, 106524, 2023 | 15 | 2023 |
Identification of pathway-specific protein domain by incorporating hyperparameter optimization based on 2D convolutional neural network A Ghualm, X Lei, Y Zhang, S Cheng, M Guo IEEE Access 8, 180140-180155, 2020 | 10 | 2020 |
Identify potential circRNA-disease associations through a multi-objective evolutionary algorithm Y Zhang, X Lei, C Dai, Y Pan, FX Wu Information Sciences 647, 119437, 2023 | 5 | 2023 |
Firefly clustering method for mining protein complexes Y Zhang, X Lei, Y Tan Advances in Swarm Intelligence: 8th International Conference, ICSI 2017 …, 2017 | 4 | 2017 |
Application of fireworks algorithm in bioinformatics Y Zhang, X Lei, Y Tan Handbook of Research on Fireworks Algorithms and Swarm Intelligence, 233-262, 2020 | 2 | 2020 |
Human drug-pathway association prediction based on network consistency projection A Ghulam, X Lei, Y Zhang, Z Wu Computational Biology and Chemistry 97, 107624, 2022 | 1 | 2022 |
Mining protein complexes based on topology potential from weighted dynamic PPI network X Lei, Y Zhang, FX Wu, A Zhang 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016 | 1 | 2016 |
A Review of Drug-related Associations Prediction Based on Artificial Intelligence Methods M Ma, X Lei, Y Zhang Current Bioinformatics, 10.2174/1574893618666230707123817, 2023 | | 2023 |
Negative Sample Selection for miRNA-Disease Association Prediction Models Y Ding, F Wang, Y Zhang, FX Wu Machine Learning Methods for Multi-Omics Data Integration, 75-90, 2023 | | 2023 |
Pathway-Specific Protein Domains (PSPD) Discrimination by Using a Hybrid Feature Space Based on Deep Neural Network (DNN) A Ghulam, XJ Lei, Y Zhang, Z Wu | | 2020 |
PDG-PIO: Predicting Disease-genes Based on Pigeon-inspired Optimization Y Zhang, X Lei, S Cheng 2019 IEEE Congress on Evolutionary Computation (CEC), 3285-3291, 2019 | | 2019 |
Firefly algorithm and its applications X Lei, Y Zhang, J Zhao, S Cheng, Y Tan Swarm Intelligence: Innovation, New Algorithms and Methods 119, 221, 2018 | | 2018 |