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| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 13651 | 2019 |
| Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 10156 | 2012 |
| Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, CA Lozupone, ... Proceedings of the national academy of sciences 108 (supplement_1), 4516-4522, 2011 | 8593 | 2011 |
| UniFrac: a new phylogenetic method for comparing microbial communities C Lozupone, R Knight Applied and environmental microbiology 71 (12), 8228-8235, 2005 | 8209 | 2005 |
| Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... nature 486 (7402), 222-227, 2012 | 8131 | 2012 |
| Obesity alters gut microbial ecology RE Ley, F Bäckhed, P Turnbaugh, CA Lozupone, RD Knight, JI Gordon Proceedings of the national academy of sciences 102 (31), 11070-11075, 2005 | 7320 | 2005 |
| Diversity, stability and resilience of the human gut microbiota CA Lozupone, JI Stombaugh, JI Gordon, JK Jansson, R Knight Nature 489 (7415), 220-230, 2012 | 5545 | 2012 |
| Evolution of mammals and their gut microbes RE Ley, M Hamady, C Lozupone, PJ Turnbaugh, RR Ramey, JS Bircher, ... science 320 (5883), 1647-1651, 2008 | 3964 | 2008 |
| Soil bacterial and fungal communities across a pH gradient in an arable soil J Rousk, E Bååth, PC Brookes, CL Lauber, C Lozupone, JG Caporaso, ... The ISME journal 4 (10), 1340-1351, 2010 | 3764 | 2010 |
| UniFrac: an effective distance metric for microbial community comparison C Lozupone, ME Lladser, D Knights, J Stombaugh, R Knight The ISME journal 5 (2), 169-172, 2011 | 2614 | 2011 |
| Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities CA Lozupone, M Hamady, ST Kelley, R Knight Applied and environmental microbiology 73 (5), 1576-1585, 2007 | 2557 | 2007 |
| A framework for human microbiome research Nature 486 (7402), 215-221, 2012 | 2385* | 2012 |
| Worlds within worlds: evolution of the vertebrate gut microbiota RE Ley, CA Lozupone, M Hamady, R Knight, JI Gordon Nature Reviews Microbiology 6 (10), 776-788, 2008 | 1909 | 2008 |
| Global patterns in bacterial diversity CA Lozupone, R Knight Proceedings of the National Academy of Sciences 104 (27), 11436-11440, 2007 | 1832 | 2007 |
| Normalization and microbial differential abundance strategies depend upon data characteristics S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... Microbiome 5, 1-18, 2017 | 1751 | 2017 |
| UniFrac–an online tool for comparing microbial community diversity in a phylogenetic context C Lozupone, M Hamady, R Knight BMC bioinformatics 7, 1-14, 2006 | 1595 | 2006 |
| Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data M Hamady, C Lozupone, R Knight The ISME journal 4 (1), 17-27, 2010 | 1216 | 2010 |
| Cohabiting family members share microbiota with one another and with their dogs SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ... elife 2, e00458, 2013 | 1163 | 2013 |
| Environmental and ecological factors that shape the gut bacterial communities of fish: a meta‐analysis KE Sullam, SD Essinger, CA Lozupone, MP O’CONNOR, GL Rosen, ... Molecular ecology 21 (13), 3363-3378, 2012 | 954 | 2012 |
