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Nika Shakiba
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Genome-wide characterization of the routes to pluripotency
SMI Hussein, MC Puri, PD Tonge, M Benevento, AJ Corso, JL Clancy, ...
Nature 516 (7530), 198-206, 2014
2412014
A stepwise model of reaction-diffusion and positional information governs self-organized human peri-gastrulation-like patterning
M Tewary, J Ostblom, L Prochazka, T Zulueta-Coarasa, N Shakiba, ...
Development 144 (23), 4298-4312, 2017
1572017
Derivation, expansion and differentiation of induced pluripotent stem cells in continuous suspension cultures
DA Fluri, PD Tonge, H Song, RP Baptista, N Shakiba, S Shukla, G Clarke, ...
Nature methods 9 (5), 509-516, 2012
1302012
Electrodeformation for single cell mechanical characterization
J Chen, M Abdelgawad, L Yu, N Shakiba, WY Chien, Z Lu, WR Geddie, ...
Journal of Micromechanics and Microengineering 21 (5), 054012, 2011
1092011
Stem cell bioengineering: building from stem cell biology
M Tewary, N Shakiba, PW Zandstra
Nature Reviews Genetics 19 (10), 595-614, 2018
922018
CD24 tracks divergent pluripotent states in mouse and human cells
N Shakiba, CA White, YY Lipsitz, A Yachie-Kinoshita, PD Tonge, ...
Nature communications 6 (1), 7329, 2015
912015
Cell competition during reprogramming gives rise to dominant clones
N Shakiba, A Fahmy, G Jayakumaran, S McGibbon, L David, D Trcka, ...
Science 364 (6438), eaan0925, 2019
902019
The optoelectronic microrobot: A versatile toolbox for micromanipulation
S Zhang, EY Scott, J Singh, Y Chen, Y Zhang, M Elsayed, ...
Proceedings of the National Academy of sciences 116 (30), 14823-14828, 2019
882019
Patterned optoelectronic tweezers: A new scheme for selecting, moving, and storing dielectric particles and cells
S Zhang, N Shakiba, Y Chen, Y Zhang, P Tian, J Singh, MD Chamberlain, ...
Small 14 (45), 1803342, 2018
492018
Context-aware synthetic biology by controller design: Engineering the mammalian cell
N Shakiba, RD Jones, R Weiss, D Del Vecchio
Cell systems 12 (6), 561-592, 2021
462021
High-throughput micropatterning platform reveals Nodal-dependent bisection of peri-gastrulation–associated versus preneurulation-associated fate patterning
M Tewary, D Dziedzicka, J Ostblom, L Prochazka, N Shakiba, T Heydari, ...
PLoS biology 17 (10), e3000081, 2019
452019
Engineering cell fitness: lessons for regenerative medicine
N Shakiba, PW Zandstra
Current Opinion in Biotechnology 47, 7-15, 2017
272017
Searching for superspreaders: Identifying epidemic patterns associated with superspreading events in stochastic models
CJ Edholm, BO Emerenini, AL Murillo, O Saucedo, N Shakiba, X Wang, ...
Understanding complex biological systems with mathematics, 1-29, 2018
172018
How can Waddington-like landscapes facilitate insights beyond developmental biology?
N Shakiba, C Li, J Garcia-Ojalvo, KH Cho, K Patil, A Walczak, YY Liu, ...
Cell systems 13 (1), 4-9, 2022
112022
Effects of environmental variability on superspreading transmission events in stochastic epidemic models
N Shakiba, CJ Edholm, BO Emerenini, AL Murillo, A Peace, O Saucedo, ...
Infectious Disease Modelling 6, 560-583, 2021
92021
A hybrid epidemic model to explore stochasticity in COVID-19 dynamics
KKL Hwang, CJ Edholm, O Saucedo, LJS Allen, N Shakiba
Bulletin of Mathematical Biology 84 (9), 91, 2022
82022
The field of cell competition comes of age: Semantics and technological synergy
K Maheden, VW Zhang, N Shakiba
Frontiers in Cell and Developmental Biology 10, 891569, 2022
82022
A defined platform of human peri-gastrulation-like biological fate patterning reveals coordination between Reaction-Diffusion and Positional-Information
M Tewary, J □ stblom, N Shakiba, PW Zandstra
BioRxiv, 102376, 2017
72017
Evening the playing field: microenvironmental control over stem cell competition during fate programming
K Maheden, OS Bashth, N Shakiba
Current Opinion in Genetics & Development 70, 66-75, 2021
52021
Synthetic genetic circuits to uncover and enforce the OCT4 trajectories of successful reprogramming of human fibroblasts
K Ilia, N Shakiba, T Bingham, RD Jones, MM Kaminski, E Aravera, ...
bioRxiv, 2023
42023
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