|Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation|
BR Jackson, C Tarr, E Strain, KA Jackson, A Conrad, H Carleton, LS Katz, ...
Reviews of Infectious Diseases 63 (3), 380-386, 2016
|Multi-virulence-locus sequence typing identifies single nucleotide polymorphisms which differentiate epidemic clones and outbreak strains of Listeria monocytogenes|
Y Chen, W Zhang, SJ Knabel
Journal of clinical microbiology 45 (3), 835-846, 2007
|Multiplex PCR for simultaneous detection of bacteria of the genus Listeria, Listeria monocytogenes, and major serotypes and epidemic clones of L. monocytogenes|
Y Chen, SJ Knabel
Applied and environmental microbiology 73 (19), 6299-6304, 2007
|comK prophage junction fragments as markers for Listeria monocytogenes genotypes unique to individual meat and poultry processing plants and a model for rapid niche-specific …|
B Verghese, M Lok, J Wen, V Alessandria, Y Chen, S Kathariou, S Knabel
Applied and environmental microbiology 77 (10), 3279-3292, 2011
|Novel epidemic clones of Listeria monocytogenes, United States, 2011|
S Lomonaco, B Verghese, P Gerner-Smidt, C Tarr, L Gladney, L Joseph, ...
Emerging infectious diseases 19 (1), 147, 2013
|Infectious Dose of Listeria monocytogenes in Outbreak Linked to Ice Cream, United States, 2015|
R Pouillot, K Klontz, Y Chen, L Burall, D Macarisin, M Doyle, K Bally, ...
Emerging Infectious Disease 22 (12), 2016
|Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak|
A Ottesen, P Ramachandran, E Reed, J White, N Hasan, P Subramanian, ...
BMC Microbiology, 275, 2016
|Core genome multilocus sequence typing for identification of globally distributed clonal groups and differentiation of outbreak strains of Listeria monocytogenes|
Y Chen, N Gonzalez-Escalona, TS Hammack, M Allard, EA Strain, ...
Applied and Environmental Microbiology 82 (20), 6258-6272, 2016
|Molecular subtyping and virulence gene analysis of Listeria monocytogenes isolates from food|
J Shen, L Rump, Y Zhang, Y Chen, X Wang, J Meng
Food Microbiology 35 (1), 58-64, 2013
|Multi-virulence-locus sequence typing clarifies epidemiology of recent listeriosis outbreaks in the United States|
Y Chen, W Zhang, SJ Knabel
Journal of clinical microbiology 43 (10), 5291-5294, 2005
|Listeria monocytogenes in Stone Fruits Linked to a Multistate Outbreak: Enumeration of Cells and Whole-Genome Sequencing|
Y Chen, LS Burall, Y Luo, R Timme, D Melka, T Muruvanda, J Payne, ...
Applied and Environmental Microbiology, AEM. 01486-16, 2016
|Method for the isolation and detection of Enterobacter sakazakii (Cronobacter) from powdered infant formula|
KA Lampel, Y Chen
International journal of food microbiology 136 (2), 179-184, 2009
|Whole Genome and Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analyses of Listeria monocytogenes Isolates Associated with an Outbreak Linked to …|
Y Chen, Y Luo, H Carleton, R Timme, D Melka, T Muruvanda, C Wang, ...
Applied and Environmental Microbiology 83 (15), e00633-17, 2017
|Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States|
Y Chen, Y Luo, P Curry, R Timme, D Melka, M Doyle, M Parish, ...
PLOS One 12 (2), 2017
|Multistate outbreak of listeriosis caused by imported cheese and evidence of cross-contamination of other cheeses, USA, 2012|
KE Heiman, VB Garalde, M Gronostaj, KA Jackson, S Beam, L Joseph, ...
Epidemiology & Infection 144 (13), 2698-2708, 2016
|BAM: detection and enumeration of Listeria monocytogenes|
AD Hitchins, K Jinneman, Y Chen
|Quasi-metagenomics and realtime sequencing aided detection and subtyping of Salmonella enterica from food samples|
JY Hyeon, S Li, DA Mann, S Zhang, Z Li, Y Chen, X Deng
Applied and Environmental Microbiology 84 (4), e02340-17, 2018
|An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella|
J Pettengill, Y Luo, S Davis, Y Chen, N Gonzalez-Escalona, A Ottesen, ...
|Prevalence and level of Listeria monocytogenes in ice cream linked to a listeriosis outbreak in the United States|
Y Chen, LS Burall, D Macarisin, R Pouillot, E Strain, AJ De Jesus, ...
Journal of Food Protection® 79 (11), 1828-1832, 2016
|Development of an improved protocol for the isolation and detection of Enterobacter sakazakii (Cronobacter) from powdered infant formula|
YI Chen, KY Song, EW Brown, KA Lampel
Journal of Food Protection® 73 (6), 1016-1022, 2010