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Gianluca Pollastri
Gianluca Pollastri
Associate Professor, University College Dublin
Verified email at ucd.ie
Title
Cited by
Cited by
Year
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
G Pollastri, D Przybylski, B Rost, P Baldi
Proteins: Structure, Function, and Bioinformatics 47 (2), 228-235, 2002
9602002
Exploiting the past and the future in protein secondary structure prediction
P Baldi, S Brunak, P Frasconi, G Soda, G Pollastri
Bioinformatics 15 (11), 937-946, 1999
6391999
Porter: a new, accurate server for protein secondary structure prediction
G Pollastri, A McLysaght
Bioinformatics 21 (8), 1719-1720, 2005
5712005
Deep architectures and deep learning in chemoinformatics: the prediction of aqueous solubility for drug-like molecules
A Lusci, G Pollastri, P Baldi
Journal of chemical information and modeling 53 (7), 1563-1575, 2013
4772013
Prediction of coordination number and relative solvent accessibility in proteins
G Pollastri, P Baldi, P Fariselli, R Casadio
Proteins: Structure, Function, and Bioinformatics 47 (2), 142-153, 2002
3062002
Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity
C Mooney, NJ Haslam, G Pollastri, DC Shields
Public Library of Science 7 (10), e45012, 2012
2732012
The principled design of large-scale recursive neural network architectures--dag-rnns and the protein structure prediction problem
P Baldi, G Pollastri
The Journal of Machine Learning Research 4, 575-602, 2003
2552003
A neural network approach to ordinal regression
J Cheng, Z Wang, G Pollastri
2008 IEEE international joint conference on neural networks (IEEE worldá…, 2008
2102008
Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners
G Pollastri, P Baldi
Bioinformatics 18 (suppl_1), S62-S70, 2002
2022002
Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines
A Vullo, O Bortolami, G Pollastri, SCE Tosatto
Nucleic acids research 34 (suppl_2), W164-W168, 2006
1552006
Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information
G Pollastri, AJM Martin, C Mooney, A Vullo
BMC bioinformatics 8 (1), 1-12, 2007
1512007
Porter, PaleAle 4.0: high-accuracy prediction of protein secondary structure and relative solvent accessibility
C Mirabello, G Pollastri
Bioinformatics 29 (16), 2056-2058, 2013
1352013
Deep learning methods in protein structure prediction
M Torrisi, G Pollastri, Q Le
Computational and Structural Biotechnology Journal 18, 1301-1310, 2020
1312020
CPPpred: prediction of cell penetrating peptides
TA Holton, G Pollastri, DC Shields, C Mooney
Bioinformatics 29 (23), 3094-3096, 2013
1162013
A two-stage approach for improved prediction of residue contact maps
A Vullo, I Walsh, G Pollastri
BMC bioinformatics 7 (1), 1-12, 2006
1132006
Distill: a suite of web servers for the prediction of one-, two-and three-dimensional structural features of proteins
D Ba˙, AJM Martin, C Mooney, A Vullo, I Walsh, G Pollastri
BMC bioinformatics 7 (1), 1-8, 2006
1052006
Bidirectional dynamics for protein secondary structure prediction
P Baldi, S Brunak, P Frasconi, G Pollastri, G Soda
Sequence Learning, 80-104, 2000
982000
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs
I Walsh, AJM Martin, T Di Domenico, A Vullo, G Pollastri, SCE Tosatto
Nucleic acids research 39 (suppl_2), W190-W196, 2011
972011
Matching protein beta-sheet partners by feedforward and recurrent neural networks
P Baldi, G Pollastri, CA Andersen, S Brunak
Proceedings of the 2000 Conference on Intelligent Systems for Moleculará…, 2000
802000
Prediction of short linear protein binding regions
C Mooney, G Pollastri, DC Shields, NJ Haslam
Journal of molecular biology 415 (1), 193-204, 2012
792012
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