|A consensus genome-scale reconstruction of Chinese hamster ovary cell metabolism|
H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ...
Cell Systems 3 (5), 434-443. e8, 2016
|Essential role of the ESX-5 secretion system in outer membrane permeability of pathogenic mycobacteria|
LS Ates, R Ummels, S Commandeur, R van der Weerd, M Sparrius, ...
PLoS Genet 11 (5), e1005190, 2015
|Genome-wide functional analysis of Plasmodium protein phosphatases reveals key regulators of parasite development and differentiation|
Cell Host and Microbe 16 (1), 128-40, 2014
|The evolution of genome-scale models of cancer metabolism|
NE Lewis, AM Abdel-Haleem
Frontiers in physiology 4, 237, 2013
|The emerging Facets of Non-cancerous Warburg effect|
AM Abdel-Haleem, NE Lewis, N Jamshidi, K Mineta, X Gao, T Gojobori
Frontiers in endocrinology 8, 279, 2017
|Low concentrations of vitamin C reduce the synthesis of extracellular polymers and destabilize bacterial biofilms|
S Pandit, V Ravikumar, AM Abdel-Haleem, A Derouiche, V Mokkapati, ...
Frontiers in Microbiology 8, 2599, 2017
|Malaria parasite metabolic pathways (MPMP) upgraded with targeted chemical compounds|
H Ginsburg, AM Abdel-Haleem
Trends in parasitology 32 (1), 7-9, 2016
|Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses|
AJS Ferreira, R Siam, JC Setubal, A Moustafa, A Sayed, FS Chambergo, ...
PloS one 9 (6), e97338, 2014
|Functional interrogation of Plasmodium genus metabolism identifies species-and stage-specific differences in nutrient essentiality and drug targeting|
AM Abdel-Haleem, H Hefzi, K Mineta, X Gao, T Gojobori, BO Palsson, ...
PLoS computational biology 14 (1), e1005895, 2018
|Egypt’s Red Sea coast: phylogenetic analysis of cultured microbial consortia in industrialized sites|
GA Mustafa, A Abd-Elgawad, AM Abdel Haleem, R Siam
Frontiers in microbiology 5, 363, 2014
|Expression of RFC/SLC19A1 is associated with tumor type in bladder cancer patients|
AM Abdel-Haleem, MI El-Zeiry, LG Mahran, K Abou-Aisha, MH Rady, ...
PloS one 6 (7), e21820, 2011
|Dual RNA-seq identifies human mucosal immunity protein Mucin-13 as a hallmark of Plasmodium exoerythrocytic infection|
GM LaMonte, P Orjuela-Sanchez, J Calla, LT Wang, S Li, J Swann, ...
Nature communications 10 (1), 1-13, 2019
|Malaria parasites regulate intra-erythrocytic development duration via serpentine receptor 10 to coordinate with host rhythms|
AK Subudhi, AJ O’Donnell, A Ramaprasad, HM Abkallo, A Kaushik, ...
Nature Communications 11 (1), 1-15, 2020
|Disruption of the coordination between host circadian rhythms and malaria parasite development alters the duration of the intraerythrocytic cycle|
A Subudhi, AJ O'Donnell, A Ramaprasad, HM Abkallo, A Kaushik, ...
Cold Spring Harbor Laboratory, 2019
|Dual RNAseq shows the human mucosal immunity protein, MUC13, is a hallmark of Plasmodium exoerythrocytic infection|
GM LaMonte, P Orjuela-Sanchez, L Wang, S Li, J Swann, AN Cowell, ...
bioRxiv, 183764, 2017
|Integrated Metabolic Modeling, Culturing, and Transcriptomics Explain Enhanced Virulence of Vibrio cholerae during Coinfection with Enterotoxigenic Escherichia coli|
AM Abdel-Haleem, V Ravikumar, B Ji, K Mineta, X Gao, J Nielsen, ...
Msystems 5 (5), 2020
|Integrated metabolic modeling, culturing and transcriptomics explains enhanced virulence of V. cholerae during co-infection with ETEC|
A Mohamed, V Ravikumar, B Ji, K Minetao, X Gao, J Nielson, T Gojobori, ...
|Comparative metabolic modeling and analysis of human pathogens|
|Systems-biology guided identification of metabolic genes implicated in the activation of T-cells|
A Mohamed, A Abuelela, J Merzaban, K Mineta, N Jamshidi, N Lewis, ...
F1000Research 5, 2016
|Genome sequence of a multidrug-resistant strain of Stenotrophomonas maltophilia with carbapenem resistance, isolated from King Abdullah Medical City, Makkah, Saudi Arabia|
AM Abdel-Haleem, Z Rchiad, BK Khan, AM Abdallah, R Naeem, ...
Genome announcements 3 (5), 2015