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Xinqiu (Xin-Qiu) Yao
Title
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Cited by
Year
Integrating protein structural dynamics and evolutionary analysis with Bio3D
L Skjærven, XQ Yao, G Scarabelli, BJ Grant
BMC bioinformatics 15 (1), 399, 2014
3422014
CafeMol: a coarse-grained biomolecular simulator for simulating proteins at work
H Kenzaki, N Koga, N Hori, R Kanada, W Li, K Okazaki, XQ Yao, ...
Journal of Chemical Theory and Computation 7 (6), 1979-1989, 2011
2032011
The Bio3D packages for structural bioinformatics
BJ Grant, L Skjærven, XQ Yao
Protein Science 30 (1), 20-30, 2021
1862021
Structural and Molecular Mechanisms of Cytokine-Mediated Endocrine Resistance in Human Breast Cancer Cells
JD Stender, JC Nwachukwu, I Kastrati, Y Kim, T Strid, M Yakir, ...
Molecular Cell 65 (6), 1122-1135. e5, 2017
1102017
Drug export and allosteric coupling in a multidrug transporter revealed by molecular simulations
XQ Yao, H Kenzaki, S Murakami, S Takada
Nature communications 1, 117, 2010
962010
A dynamic Bayesian network approach to protein secondary structure prediction
XQ Yao, H Zhu, ZS She
BMC bioinformatics 9 (1), 49, 2008
842008
Dynamic coupling and allosteric networks in the alpha subunit of heterotrimeric G proteins
XQ Yao, R Malik, NW Griggs, L Skjærven, JR Traynor, ...
Biophysical Journal 110 (3), 427a, 2016
782016
Structures of rhodopsin in complex with G-protein-coupled receptor kinase 1
Q Chen, M Plasencia, Z Li, S Mukherjee, D Patra, CL Chen, T Klose, ...
Nature 595 (7868), 600-605, 2021
692021
Drug uptake pathways of multidrug transporter AcrB studied by molecular simulations and site-directed mutagenesis experiments
XQ Yao, N Kimura, S Murakami, S Takada
Journal of the American Chemical Society 135 (20), 7474-7485, 2013
562013
Online interactive analysis of protein structure ensembles with Bio3D-web
L Skjærven, S Jariwala, XQ Yao, BJ Grant
Bioinformatics 32 (22), 3510-3512, 2016
442016
Systems structural biology analysis of ligand effects on ERα predicts cellular response to environmental estrogens and anti-hormone therapies
JC Nwachukwu, S Srinivasan, NE Bruno, J Nowak, NJ Wright, F Minutolo, ...
Cell chemical biology 24 (1), 35-45, 2017
422017
Elucidating Allosteric Communications in Proteins with Difference Contact Network Analysis
XQ Yao, M Momin, D Hamelberg
Journal of chemical information and modeling 58 (7), 1325-1330, 2018
392018
Rapid Characterization of Allosteric Networks with Ensemble Normal Mode Analysis
XQ Yao, L Skjærven, BJ Grant
The Journal of Physical Chemistry B 120 (33), 8276-8288, 2016
362016
Mapping the processivity determinants of the kinesin-3 motor domain
G Scarabelli, V Soppina, XQ Yao, J Atherton, CA Moores, KJ Verhey, ...
Biophysical journal 109 (8), 1537-1540, 2015
312015
Domain-Opening and Dynamic Coupling in the α-Subunit of Heterotrimeric G Proteins
XQ Yao, BJ Grant
Biophysical journal 105 (2), L08-L10, 2013
312013
Comparative structural dynamic analysis of GTPases
H Li, XQ Yao, BJ Grant
PLoS computational biology 14 (11), e1006364, 2018
242018
Structural Determinants Influencing the Potency and Selectivity of Indazole-Paroxetine Hybrid G Protein–Coupled Receptor Kinase 2 Inhibitors
R Bouley, HV Waldschmidt, MC Cato, A Cannavo, J Song, JY Cheung, ...
Molecular pharmacology 92 (6), 707-717, 2017
242017
Navigating the conformational landscape of G protein–coupled receptor kinases during allosteric activation
XQ Yao, MC Cato, E Labudde, TS Beyett, JJG Tesmer, BJ Grant
Journal of Biological Chemistry 292 (39), 16032-16043, 2017
232017
Detecting Functional Dynamics in Proteins with Comparative Perturbed-Ensembles Analysis
XQ Yao, D Hamelberg
Accounts of Chemical Research, 2019
212019
Establishing a Framework of Using Residue–Residue Interactions in Protein Difference Network Analysis
XQ Yao, M Momin, D Hamelberg
J. Chem. Inf. Model. 59 (7), 3222-3228, 2019
202019
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Articles 1–20