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Hashem Koohy
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Colonic epithelial cell diversity in health and inflammatory bowel disease
K Parikh, A Antanaviciute, D Fawkner-Corbett, M Jagielowicz, A Aulicino, ...
Nature 567 (7746), 49-55, 2019
6622019
Structural remodeling of the human colonic mesenchyme in inflammatory bowel disease
J Kinchen, HH Chen, K Parikh, A Antanaviciute, M Jagielowicz, ...
Cell 175 (2), 372-386. e17, 2018
6002018
Spatiotemporal analysis of human intestinal development at single-cell resolution
D Fawkner-Corbett, A Antanaviciute, K Parikh, M Jagielowicz, AS Gerós, ...
Cell 184 (3), 810-826. e23, 2021
3752021
Single-cell atlas of colonic CD8+ T cells in ulcerative colitis
D Corridoni, A Antanaviciute, T Gupta, D Fawkner-Corbett, A Aulicino, ...
Nature medicine 26 (9), 1480-1490, 2020
1762020
Weakly prime modules
M Behboodi, H Koohy
Vietnam J. Math 32 (2), 185-195, 2004
1292004
Can we predict T cell specificity with digital biology and machine learning?
D Hudson, RA Fernandes, M Basham, G Ogg, H Koohy
Nature Reviews Immunology 23 (8), 511-521, 2023
1102023
In silico identification of vaccine targets for 2019-nCoV
CH Lee, H Koohy
F1000Research 9, 2020
992020
A comparison of peak callers used for DNase-Seq data
H Koohy, TA Down, M Spivakov, T Hubbard
PloS one 9 (5), e96303, 2014
902014
Chromatin accessibility data sets show bias due to sequence specificity of the DNase I enzyme
H Koohy, TA Down, TJ Hubbard
PloS one 8 (7), e69853, 2013
792013
Modules whose certain submodules are prime
M Behboodi, OAS Karamzadeh, H Koohy
Vietnam J. Math 32 (3), 303-317, 2004
782004
Discovery of a CD10 negative B-progenitor in human fetal life identifies unique ontogeny-related developmental programs
S O'Byrne, N Elliott, S Rice, G Buck, N Fordham, C Garnett, L Godfrey, ...
Blood, 2019
762019
Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination
AEC Daniel J. Bolland3, Hashem Koohy3, Andrew L. Wood, Louise S. Matheson ...
Cell Reports, 2016
70*2016
Predicting cross-reactivity and antigen specificity of T cell receptors
CH Lee, M Salio, G Napolitani, G Ogg, A Simmons, H Koohy
Frontiers in Immunology 11, 565096, 2020
582020
Potential CD8+ T cell cross-reactivity against SARS-CoV-2 conferred by other coronavirus strains
CH Lee, MP Pinho, PR Buckley, IB Woodhouse, G Ogg, A Simmons, ...
Frontiers in immunology 11, 579480, 2020
522020
The rise and fall of machine learning methods in biomedical research
H Koohy
F1000Research, 2017
472017
A lesson from the ice bucket challenge: using social networks to publicize science
H Koohy, B Koohy
Frontiers in Genetics 5, 430, 2014
462014
Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells
H Koohy, DJ Bolland, LS Matheson, S Schoenfelder, C Stellato, A Dimond, ...
Genome biology 19, 1-24, 2018
412018
Chromatin accessibility governs the differential response of cancer and T cells to arginine starvation
NT Crump, AV Hadjinicolaou, M Xia, J Walsby-Tickle, U Gileadi, JL Chen, ...
Cell Reports 35 (6), 2021
352021
Decitabine increases neoantigen and cancer testis antigen expression to enhance T-cell–mediated toxicity against glioblastoma
R Ma, M Rei, I Woodhouse, K Ferris, S Kirschner, A Chandran, U Gileadi, ...
Neuro-oncology 24 (12), 2093-2106, 2022
302022
Local chromatin features including PU. 1 and IKAROS binding and H3K4 methylation shape the repertoire of immunoglobulin kappa genes chosen for V (D) J recombination
LS Matheson, DJ Bolland, P Chovanec, F Krueger, S Andrews, H Koohy, ...
Frontiers in immunology 8, 1550, 2017
282017
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