| COG database update: focus on microbial diversity, model organisms, and widespread pathogens MY Galperin, YI Wolf, KS Makarova, R Vera Alvarez, D Landsman, ... Nucleic Acids Research 49 (D1), D274-D281, 2021 | 623 | 2021 |
| BioContainers: An open-source and community-driven framework for software standardization Bioinformatics, 10.1093/bioinformatics/btx192, 2017 | 531* | 2017 |
| TPMCalculator: one-step software to quantify mRNA abundance of genomic features R Vera Alvarez, LS Pongor, L Marińo-Ramírez, D Landsman Bioinformatics 35 (11), 1960-1962, 2019 | 179 | 2019 |
| TPMCalculator: one-step software to quantify mRNA abundance of genomic features R Vera Alvarez, LS Pongor, L Marińo-Ramírez, D Landsman Bioinformatics 35 (11), 1960-1962, 2019 | 179 | 2019 |
| MutaBind2: predicting the impacts of single and multiple mutations on protein-protein interactions N Zhang, Y Chen, H Lu, F Zhao, RV Alvarez, A Goncearenco, ... Iscience 23 (3), 2020 | 137 | 2020 |
| Census of solo LuxR genes in prokaryotic genomes S Hudaiberdiev, KS Choudhary, R Vera Alvarez, Z Gelencsér, B Ligeti, ... Frontiers in cellular and infection microbiology 5, 20, 2015 | 98 | 2015 |
| ElasticBLAST: accelerating sequence search via cloud computing C Camacho, GM Boratyn, V Joukov, R Vera Alvarez, TL Madden BMC bioinformatics 24 (1), 117, 2023 | 60 | 2023 |
| LitSense: making sense of biomedical literature at sentence level A Allot, Q Chen, S Kim, R Vera Alvarez, DC Comeau, WJ Wilbur, Z Lu Nucleic acids research 47 (W1), W594-W599, 2019 | 56 | 2019 |
| ComQXPA quorum sensing systems may not be unique to Bacillus subtilis: a census in prokaryotic genomes I Dogsa, KS Choudhary, Z Marsetic, S Hudaiberdiev, R Vera, S Pongor, ... PloS one 9 (5), e96122, 2014 | 55 | 2014 |
| Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006 RM Gamez, F Rodríguez, NM Vidal, S Ramirez, R Vera Alvarez, ... BMC genomics 20, 1-20, 2019 | 51 | 2019 |
| Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes MY Galperin, N Yutin, YI Wolf, R Vera Alvarez, EV Koonin Journal of Bacteriology 204 (6), e00079-22, 2022 | 48 | 2022 |
| BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks LS Pongor, JM Gross, R Vera Alvarez, J Murai, SM Jang, H Zhang, ... Epigenetics & chromatin 13, 1-13, 2020 | 48 | 2020 |
| In silico analysis of accurate proteomics, complemented by selective isolation of peptides Y Perez-Riverol, A Sánchez, Y Ramos, A Schmidt, M Müller, L Betancourt, ... Journal of proteomics 74 (10), 2071-2082, 2011 | 36 | 2011 |
| Chemical compounds having antiviral activity against dengue virus and other flaviviruses YM Reyes, GC Santiago, OG Cruz, RV Alvarez, VH Galindo, NF Salazar, ... US Patent 8,722,742, 2014 | 28 | 2014 |
| Chemical Compounds Having Antiviral Activity against Dengue Virus and Other Flaviviruses Y MAZOLA REYES, G CHINEA SANTIAGO, O GUIROLA CRUZ, ... WO Patent 2,009,106,019, 2009 | 28* | 2009 |
| BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers J Bai, C Bandla, J Guo, R Vera Alvarez, M Bai, JA Vizcaíno, P Moreno, ... Journal of Proteome Research 20 (4), 2056-2061, 2021 | 27 | 2021 |
| Nonessential ribosomal proteins in bacteria and archaea identified using clusters of orthologous genes MY Galperin, YI Wolf, SK Garushyants, R Vera Alvarez, EV Koonin Journal of bacteriology 203 (11), 10.1128/jb. 00058-21, 2021 | 25 | 2021 |
| JBioWH: an open-source Java framework for bioinformatics data integration R Vera, Y Perez-Riverol, S Perez, B Ligeti, A Kertesz-Farkas, S Pongor Database 2013, bat051, 2013 | 18 | 2013 |
| Quantifying deleterious effects of regulatory variants S Li, R Vera Alvarez, R Sharan, D Landsman, I Ovcharenko Nucleic Acids Research, 1-8, 2016 | 16 | 2016 |
| A Parallel Systematic-Monte Carlo Algorithm for Exploring Conformational Space Y Perez-Riverol, R Vera, Y Mazola, A Musacchio Current topics in medicinal chemistry 12 (16), 1790-1796, 2012 | 14 | 2012 |
David LandsmanNIH NLM NCBIVerified email at ncbi.nlm.nih.gov
