Patrick M Shih
Patrick M Shih
UC Berkeley, Joint BioEnergy Institute, Lawrence Berkeley National Lab
Verified email at - Homepage
Cited by
Cited by
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
PM Shih, D Wu, A Latifi, SD Axen, DP Fewer, E Talla, A Calteau, F Cai, ...
Proceedings of the National Academy of Sciences 110 (3), 1053-1058, 2013
Direct Identification of the Meloidogyne incognita Secretome Reveals Proteins with Host Cell Reprogramming Potential
S Bellafiore, Z Shen, MN Rosso, P Abad, P Shih, SP Briggs
PLoS pathogens 4 (10), e1000192, 2008
Standards for plant synthetic biology: a common syntax for exchange of DNA parts
NJ Patron, D Orzaez, S Marillonnet, H Warzecha, C Matthewman, ...
New Phytologist 208 (1), 13-19, 2015
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
L Rajeev, UN Da Rocha, N Klitgord, EG Luning, J Fortney, SD Axen, ...
The ISME journal 7 (11), 2178-2191, 2013
Precise age of Bangiomorpha pubescens dates the origin of eukaryotic photosynthesis
TM Gibson, PM Shih, VM Cumming, WW Fischer, PW Crockford, ...
Geology 46 (2), 135-138, 2018
Crown group Oxyphotobacteria postdate the rise of oxygen
PM Shih, J Hemp, LM Ward, NJ Matzke, WW Fischer
Geobiology 15 (1), 19-29, 2017
Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins
PM Shih, NJ Matzke
Proceedings of the National Academy of Sciences 110 (30), 12355-12360, 2013
Biochemical characterization of predicted Precambrian RuBisCO
PM Shih, A Occhialini, JC Cameron, PJ Andralojc, MAJ Parry, CA Kerfeld
Nature Communications 7 (1), 10382, 2016
Introduction of a synthetic CO2-fixing photorespiratory bypass into a cyanobacterium
PM Shih, J Zarzycki, KK Niyogi, CA Kerfeld
Journal of Biological Chemistry 289 (14), 9493-9500, 2014
Evolution of phototrophy in the Chloroflexi phylum driven by horizontal gene transfer
LM Ward, J Hemp, PM Shih, SE McGlynn, WW Fischer
Frontiers in microbiology 9, 260, 2018
CRISPR–Act3. 0 for highly efficient multiplexed gene activation in plants
C Pan, X Wu, K Markel, AA Malzahn, N Kundagrami, S Sretenovic, ...
Nature plants 7 (7), 942-953, 2021
Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi
PM Shih, LM Ward, WW Fischer
Proceedings of the National Academy of Sciences 114 (40), 10749-10754, 2017
Bacterial diversification through geological time
S Louca, PM Shih, MW Pennell, WW Fischer, LW Parfrey, M Doebeli
Nature ecology & evolution 2 (9), 1458-1467, 2018
A robust gene-stacking method utilizing yeast assembly for plant synthetic biology
PM Shih, K Vuu, N Mansoori, L Ayad, KB Louie, BP Bowen, TR Northen, ...
Nature communications 7 (1), 13215, 2016
Accumulation of high-value bioproducts in planta can improve the economics of advanced biofuels
M Yang, NR Baral, BA Simmons, JC Mortimer, PM Shih, CD Scown
Proceedings of the National Academy of Sciences 117 (15), 8639-8648, 2020
Design of orthogonal regulatory systems for modulating gene expression in plants
MS Belcher, KM Vuu, A Zhou, N Mansoori, A Agosto Ramos, ...
Nature Chemical Biology 16 (8), 857-865, 2020
Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops
PM Shih, Y Liang, D Loque
The Plant Journal 87 (1), 103-117, 2016
Fatty acid and alcohol metabolism in Pseudomonas putida: functional analysis using random barcode transposon sequencing
MG Thompson, MR Incha, AN Pearson, M Schmidt, WA Sharpless, ...
Applied and environmental microbiology 86 (21), e01665-20, 2020
The evolution and productivity of carbon fixation pathways in response to changes in oxygen concentration over geological time
LM Ward, PM Shih
Free Radical Biology and Medicine 140, 188-199, 2019
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
PB Matheus Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, ...
Nature communications 10 (1), 463, 2019
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