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Patrick M Shih
Patrick M Shih
UC Berkeley, Joint BioEnergy Institute, Lawrence Berkeley National Lab
Verified email at berkeley.edu - Homepage
Title
Cited by
Cited by
Year
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
PM Shih, D Wu, A Latifi, SD Axen, DP Fewer, E Talla, A Calteau, F Cai, ...
Proceedings of the National Academy of Sciences 110 (3), 1053-1058, 2013
7782013
Direct Identification of the Meloidogyne incognita Secretome Reveals Proteins with Host Cell Reprogramming Potential
S Bellafiore, Z Shen, MN Rosso, P Abad, P Shih, SP Briggs
PLoS pathogens 4 (10), e1000192, 2008
2972008
Standards for plant synthetic biology: a common syntax for exchange of DNA parts
NJ Patron, D Orzaez, S Marillonnet, H Warzecha, C Matthewman, ...
New Phytologist 208 (1), 13-19, 2015
2432015
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
L Rajeev, UN Da Rocha, N Klitgord, EG Luning, J Fortney, SD Axen, ...
The ISME journal 7 (11), 2178-2191, 2013
2102013
Crown group Oxyphotobacteria postdate the rise of oxygen
PM Shih, J Hemp, LM Ward, NJ Matzke, WW Fischer
Geobiology 15 (1), 19-29, 2017
1452017
Precise age of Bangiomorpha pubescens dates the origin of eukaryotic photosynthesis
TM Gibson, PM Shih, VM Cumming, WW Fischer, PW Crockford, ...
Geology 46 (2), 135-138, 2018
1442018
Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins
PM Shih, NJ Matzke
Proceedings of the National Academy of Sciences 110 (30), 12355-12360, 2013
1242013
Introduction of a synthetic CO2-fixing photorespiratory bypass into a cyanobacterium
PM Shih, J Zarzycki, KK Niyogi, CA Kerfeld
Journal of Biological Chemistry 289 (14), 9493-9500, 2014
1092014
Biochemical characterization of predicted Precambrian RuBisCO
PM Shih, A Occhialini, JC Cameron, PJ Andralojc, MAJ Parry, CA Kerfeld
Nature Communications 7 (1), 10382, 2016
1062016
Evolution of phototrophy in the Chloroflexi phylum driven by horizontal gene transfer
LM Ward, J Hemp, PM Shih, SE McGlynn, WW Fischer
Frontiers in microbiology 9, 260, 2018
972018
Bacterial diversification through geological time
S Louca, PM Shih, MW Pennell, WW Fischer, LW Parfrey, M Doebeli
Nature ecology & evolution 2 (9), 1458-1467, 2018
702018
Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi
PM Shih, LM Ward, WW Fischer
Proceedings of the National Academy of Sciences 114 (40), 10749-10754, 2017
662017
CRISPR–Act3. 0 for highly efficient multiplexed gene activation in plants
C Pan, X Wu, K Markel, AA Malzahn, N Kundagrami, S Sretenovic, ...
Nature plants 7 (7), 942-953, 2021
642021
A robust gene-stacking method utilizing yeast assembly for plant synthetic biology
PM Shih, K Vuu, N Mansoori, L Ayad, KB Louie, BP Bowen, TR Northen, ...
Nature communications 7 (1), 13215, 2016
622016
Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops
PM Shih, Y Liang, D Loque
The Plant Journal 87 (1), 103-117, 2016
512016
Accumulation of high-value bioproducts in planta can improve the economics of advanced biofuels
M Yang, NR Baral, BA Simmons, JC Mortimer, PM Shih, CD Scown
Proceedings of the National Academy of Sciences 117 (15), 8639-8648, 2020
492020
Design of orthogonal regulatory systems for modulating gene expression in plants
MS Belcher, KM Vuu, A Zhou, N Mansoori, A Agosto Ramos, ...
Nature chemical biology 16 (8), 857-865, 2020
472020
Excited-state properties of the 16 kDa red carotenoid protein from Arthrospira maxima
P Chábera, M Durchan, PM Shih, CA Kerfeld, T Polívka
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1807 (1), 30-35, 2011
412011
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
PB Matheus Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, ...
Nature communications 10 (1), 463, 2019
382019
The evolution and productivity of carbon fixation pathways in response to changes in oxygen concentration over geological time
LM Ward, PM Shih
Free Radical Biology and Medicine 140, 188-199, 2019
362019
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