متابعة
Benedict Paten
Benedict Paten
Professor; Associate Director, UC Santa Cruz Genomics Institute, University of California
بريد إلكتروني تم التحقق منه على ucsc.edu - الصفحة الرئيسية
عنوان
عدد مرات الاقتباسات
عدد مرات الاقتباسات
السنة
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project‏
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...‏
nature 447 (7146), 799-816, 2007‏
61262007
Genetic effects on gene expression across human tissues‏
GT Consortium, DA Laboratory‏
Nature 550 (7675), 204-213, 2017‏
3561*2017
GENCODE reference annotation for the human and mouse genomes‏
A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ...‏
Nucleic acids research 47 (D1), D766-D773, 2019‏
29272019
The complete sequence of a human genome‏
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...‏
Science 376 (6588), 44-53, 2022‏
25142022
Towards complete and error-free genome assemblies of all vertebrate species‏
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...‏
Nature 592 (7856), 737-746, 2021‏
20352021
Nanopore sequencing and assembly of a human genome with ultra-long reads‏
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...‏
Nature biotechnology 36 (4), 338-345, 2018‏
20172018
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community‏
M Jain, HE Olsen, B Paten, M Akeson‏
Genome biology 17, 1-11, 2016‏
18032016
Expanded encyclopaedias of DNA elements in the human and mouse genomes‏
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...‏
Nature 583 (7818), 699-710, 2020‏
14872020
Toil enables reproducible, open source, big biomedical data analyses‏
J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...‏
Nature biotechnology 35 (4), 314-316, 2017‏
11422017
The UCSC genome browser database: 2015 update‏
KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ...‏
Nucleic acids research 43 (D1), D670-D681, 2015‏
10982015
GENCODE 2021‏
A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ...‏
Nucleic acids research 49 (D1), D916-D923, 2021‏
10352021
A user’s guide to the encyclopedia of DNA elements (ENCODE)‏
ENCODE Project Consortium‏
PLoS Biol 9 (4), e1001046, 2011‏
8752011
Improved data analysis for the MinION nanopore sequencer‏
M Jain, IT Fiddes, KH Miga, HE Olsen, B Paten, M Akeson‏
Nature methods 12 (4), 351-356, 2015‏
8182015
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species‏
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...‏
Gigascience 2 (1), 2047-217X-2-10, 2013‏
8172013
Telomere-to-telomere assembly of a complete human X chromosome‏
KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ...‏
Nature 585 (7823), 79-84, 2020‏
7572020
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures‏
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...‏
Nature 450 (7167), 219-232, 2007‏
7222007
A user's guide to the encyclopedia of DNA elements (ENCODE)‏
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...‏
PLoS biology 9 (4), 2011‏
6842011
Variation graph toolkit improves read mapping by representing genetic variation in the reference‏
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...‏
Nature biotechnology 36 (9), 875-879, 2018‏
6532018
Nanopore native RNA sequencing of a human poly (A) transcriptome (vol 16, pg, 1297, 2019)‏
RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ...‏
NATURE METHODS 17 (1), 114-114, 2020‏
649*2020
Assemblathon 1: a competitive assessment of de novo short read assembly methods‏
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...‏
Genome research 21 (12), 2224-2241, 2011‏
6372011
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مقالات 1–20