| Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021 | 1462 | 2021 |
| Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... medrxiv, 2020.12. 21.20248640, 2020 | 1197 | 2020 |
| Sixteen novel lineages of SARS-CoV-2 in South Africa H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ... Nature medicine 27 (3), 440-446, 2021 | 362 | 2021 |
| Kosakovsky Pond SL, Weaver S, Martin D, Lessells RJ, Bhiman JN, Williamson C, de Oliveira T. Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021 | 214 | 2021 |
| Outbreak of Listeria monocytogenes in South Africa, 2017–2018: Laboratory Activities and Experiences Associated with Whole-Genome Sequencing Analysis of … AM Smith, NP Tau, SL Smouse, M Allam, A Ismail, NR Ramalwa, ... Foodborne pathogens and disease 16 (7), 524-530, 2019 | 205 | 2019 |
| Outbreak of listeriosis in South Africa associated with processed meat J Thomas, N Govender, KM McCarthy, LK Erasmus, TJ Doyle, M Allam, ... New England Journal of Medicine 382 (7), 632-643, 2020 | 193 | 2020 |
| A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ... Science 374 (6566), 423-431, 2021 | 187 | 2021 |
| 36th international symposium on intensive care and emergency medicine: Brussels, Belgium. 15-18 March 2016 RM Bateman, MD Sharpe, JE Jagger, CG Ellis, J Solé-Violán, ... Critical care 20, 13-182, 2016 | 150 | 2016 |
| Emergence of a SARS-CoV-2 variant of concern with mutations in spike glycoprotein H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021 | 146 | 2021 |
| The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ... Science 378 (6615), eabq5358, 2022 | 90 | 2022 |
| HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler, ... Cell host & microbe 29 (7), 1093-1110, 2021 | 84 | 2021 |
| Genome sequencing of extended-spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae isolated from pigs and abattoir workers in Cameroon LL Founou, RC Founou, M Allam, A Ismail, CF Djoko, SY Essack Frontiers in microbiology 9, 331706, 2018 | 56 | 2018 |
| Whole-genome sequences of Listeria monocytogenes sequence type 6 isolates associated with a large foodborne outbreak in South Africa, 2017 to 2018 M Allam, N Tau, SL Smouse, PS Mtshali, F Mnyameni, ZTH Khumalo, ... Genome announcements 6 (25), 10.1128/genomea. 00538-18, 2018 | 54 | 2018 |
| Whole Genome Sequencing of Extended Spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae Isolated from Hospitalized Patients in KwaZulu-Natal … RC Founou, LL Founou, M Allam, A Ismail, SY Essack Scientific reports 9 (1), 6266, 2019 | 52 | 2019 |
| Human Blastomycosis in South Africa Caused by Blastomyces percursus and Blastomyces emzantsi sp. nov., 1967 to 2014 TG Maphanga, M Birkhead, JF Muñoz, M Allam, TG Zulu, CA Cuomo, ... Journal of clinical microbiology 58 (3), 10.1128/jcm. 01661-19, 2020 | 43 | 2020 |
| Genomic analysis of methicillin-resistant Staphylococcus aureus isolated from poultry and occupational farm workers in Umgungundlovu District, South Africa DG Amoako, AM Somboro, ALK Abia, M Allam, A Ismail, L Bester, ... Science of the total environment 670, 704-716, 2019 | 36 | 2019 |
| Molecular characterization of Corynebacterium diphtheriae outbreak isolates, South Africa, March–June 2015 M du Plessis, N Wolter, M Allam, L de Gouveia, F Moosa, G Ntshoe, ... Emerging Infectious Diseases 23 (8), 1308, 2017 | 34 | 2017 |
| Genomic analysis of carbapenemase-producing extensively drug-resistant Klebsiella pneumoniae isolates reveals the horizontal spread of p18-43_01 plasmid encoding bla NDM-1 in … Y Ramsamy, KP Mlisana, M Allam, DG Amoako, ALK Abia, A Ismail, ... Microorganisms 8 (1), 137, 2020 | 31 | 2020 |
| Mobile genetic elements-mediated Enterobacterales-associated carbapenemase antibiotic resistance genes propagation between the environment and humans: A One Health South … Y Ramsamy, KP Mlisana, DG Amoako, ALK Abia, A Ismail, M Allam, ... Science of the Total Environment 806, 150641, 2022 | 30 | 2022 |
| Genomic characterization of multidrug-resistant ESBL-producing Klebsiella pneumoniae isolated from a Ghanaian teaching hospital N Agyepong, U Govinden, A Owusu-Ofori, DG Amoako, M Allam, J Janice, ... International Journal of Infectious Diseases 85, 117-123, 2019 | 30 | 2019 |
Prof. Arshad IsmailNational Institute for Communicable DiseasesVerified email at nicd.ac.za
