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Kentaro Tomii
Kentaro Tomii
Verified email at aist.go.jp
Title
Cited by
Cited by
Year
Parallelization of MAFFT for large-scale multiple sequence alignments
T Nakamura, KD Yamada, K Tomii, K Katoh
Bioinformatics 34 (14), 2490-2492, 2018
7222018
MitoFates: improved prediction of mitochondrial targeting sequences and their cleavage sites*[S]
Y Fukasawa, J Tsuji, SC Fu, K Tomii, P Horton, K Imai
Molecular & Cellular Proteomics 14 (4), 1113-1126, 2015
5132015
Compound–protein interaction prediction with end-to-end learning of neural networks for graphs and sequences
M Tsubaki, K Tomii, J Sese
Bioinformatics 35 (2), 309-318, 2019
4932019
Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins
K Tomii, M Kanehisa
Protein Engineering, Design and Selection 9 (1), 27-36, 1996
4601996
Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees
KD Yamada, K Tomii, K Katoh
Bioinformatics 32 (21), 3246-3251, 2016
3122016
CENP‐T provides a structural platform for outer kinetochore assembly
T Nishino, F Rago, T Hori, K Tomii, IM Cheeseman, T Fukagawa
The EMBO journal 32 (3), 424-436, 2013
2322013
Molecular architecture of the active mitochondrial protein gate
T Shiota, K Imai, J Qiu, VL Hewitt, K Tan, HH Shen, N Sakiyama, ...
Science 349 (6255), 1544-1548, 2015
2222015
Tam41 is a CDP-diacylglycerol synthase required for cardiolipin biosynthesis in mitochondria
Y Tamura, Y Harada, S Nishikawa, K Yamano, M Kamiya, T Shiota, ...
Cell metabolism 17 (5), 709-718, 2013
1842013
A comparative analysis of ABC transporters in complete microbial genomes
K Tomii, M Kanehisa
Genome research 8 (10), 1048-1059, 1998
1771998
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1642016
Mammalian NUMT insertion is non-random
J Tsuji, MC Frith, K Tomii, P Horton
Nucleic acids research 40 (18), 9073-9088, 2012
1122012
FORTE: a profile–profile comparison tool for protein fold recognition
K Tomii, Y Akiyama
Bioinformatics 20 (4), 594-595, 2004
982004
Class of cyclic ribosomal peptide synthetic genes in filamentous fungi
N Nagano, M Umemura, M Izumikawa, J Kawano, T Ishii, M Kikuchi, ...
Fungal Genetics and Biology 86, 58-70, 2016
942016
Structure of the N-terminal domain of PEX1 AAA-ATPase: characterization of a putative adaptor-binding domain
K Shiozawa, N Maita, K Tomii, A Seto, N Goda, Y Akiyama, T Shimizu, ...
Journal of Biological Chemistry 279 (48), 50060-50068, 2004
872004
Predicting mostly disordered proteins by using structure-unknown protein data
K Shimizu, Y Muraoka, S Hirose, K Tomii, T Noguchi
BMC bioinformatics 8, 1-15, 2007
732007
Mitochondrial sorting and assembly machinery operates by β-barrel switching
H Takeda, A Tsutsumi, T Nishizawa, C Lindau, JV Busto, LS Wenz, ...
Nature 590 (7844), 163-169, 2021
722021
Evolutionary analyses of caspase‐8 and its paralogs: deep origins of the apoptotic signaling pathways
K Sakamaki, K Imai, K Tomii, DJ Miller
Bioessays 37 (7), 767-776, 2015
652015
PoSSuM: a database of similar protein–ligand binding and putative pockets
JI Ito, Y Tabei, K Shimizu, K Tsuda, K Tomii
Nucleic acids research 40 (D1), D541-D548, 2012
652012
Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora
A Moya, K Sakamaki, BM Mason, L Huisman, S Forêt, Y Weiss, TE Bull, ...
BMC genomics 17, 1-20, 2016
622016
Novel mechanism of interaction of p85 subunit of phosphatidylinositol 3-kinase and ErbB3 receptor-derived phosphotyrosyl peptides
A Suenaga, N Takada, M Hatakeyama, M Ichikawa, X Yu, K Tomii, ...
Journal of Biological Chemistry 280 (2), 1321-1326, 2005
552005
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Articles 1–20