Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317, 2015 | 5959 | 2015 |
Inhibition of activated pericentromeric SINE/Alu repeat transcription in senescent human adult stem cells reinstates self-renewal VV Lunyak Cell Cycle 10 (17), 3016-3030, 2011 | 136 | 2011 |
MIR retrotransposon sequences provide insulators to the human genome J Wang, C Vicente-García, D Seruggia, E Moltó, A Fernandez-Miñán, ... Proceedings of the National Academy of Sciences 112 (32), E4428-E4437, 2015 | 123 | 2015 |
Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression D Jjingo, AB Conley, J Wang, L Mariño-Ramírez, VV Lunyak, IK Jordan Mobile DNA 5 (1), 14, 2014 | 84 | 2014 |
Genome-wide prediction and analysis of human chromatin boundary elements J Wang, VV Lunyak, IK Jordan Nucleic acids research 40 (2), 511-529, 2012 | 61 | 2012 |
A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags J Wang, A Huda, VV Lunyak, IK Jordan Bioinformatics 26 (20), 2501-2508, 2010 | 51 | 2010 |
BroadPeak: a novel algorithm for identifying broad peaks in diffuse ChIP-seq datasets J Wang, VV Lunyak, IK Jordan Bioinformatics, bts722, 2013 | 50 | 2013 |
Multi-scale chromatin state annotation using a hierarchical hidden Markov model E Marco, W Meuleman, J Huang, K Glass, L Pinello, J Wang, M Kellis, ... Nature communications 8, 15011, 2017 | 46 | 2017 |
Evidence for positive selection on recent human transposable element insertions L Rishishwar, L Wang, J Wang, VY Soojin, J Lachance, IK Jordan Gene 675, 69-79, 2018 | 35 | 2018 |
FishTEDB: a collective database of transposable elements identified in the complete genomes of fish F Shao, J Wang, H Xu, Z Peng Database 2018, 2018 | 33 | 2018 |
Patterns of transposable element expression and insertion in cancer EA Clayton, L Wang, L Rishishwar, J Wang, JF McDonald, IK Jordan Frontiers in molecular biosciences 3, 76, 2016 | 33 | 2016 |
Origin and evolution of the cystic fibrosis transmembrane regulator protein R domain A Sebastian, L Rishishwar, J Wang, KF Bernard, AB Conley, NA McCarty, ... Gene 523 (2), 137-146, 2013 | 33 | 2013 |
A c-Myc regulatory subnetwork from human transposable element sequences J Wang, NJ Bowen, L Mariño-Ramírez, IK Jordan Molecular bioSystems 5 (12), 1831-1839, 2009 | 29 | 2009 |
Chromatin signature discovery via histone modification profile alignments J Wang, VV Lunyak, IK Jordan Nucleic acids research 40 (21), 10642-10656, 2012 | 23 | 2012 |
Protein interactions with piALU RNA indicates putative participation of retroRNA in the cell cycle, DNA repair and chromatin assembly BJ Blackwell, MF Lopez, J Wang, B Krastins, D Sarracino, JR Tollervey, ... Mobile genetic elements 2 (1), 26-35, 2012 | 22 | 2012 |
Androgen-mediated perturbation of the hepatic circadian system through epigenetic modulation promotes NAFLD in PCOS mice S Roy, A Abudu, I Salinas, N Sinha, H Cline-Fedewa, AM Yaw, W Qi, ... Endocrinology 163 (10), bqac127, 2022 | 18 | 2022 |
Quantifying murine placental extracellular vesicles across gestation and in preterm birth data with tidyNano: A computational framework for analyzing and visualizing … SL Nguyen, JW Greenberg, H Wang, BW Collaer, J Wang, MG Petroff PLoS One 14 (6), e0218270, 2019 | 17 | 2019 |
Androgens regulate ovarian gene expression by balancing Ezh2-Jmjd3 mediated H3K27me3 dynamics S Roy, B Huang, N Sinha, J Wang, A Sen PLoS genetics 17 (3), e1009483, 2021 | 15 | 2021 |
Reconstruct high-resolution 3D genome structures for diverse cell-types using FLAMINGO H Wang, J Yang, Y Zhang, J Qian, J Wang Nature Communications 13 (1), 1-18, 2022 | 11 | 2022 |
Predict long-range enhancer regulation based on protein–protein interactions between transcription factors H Wang, B Huang, J Wang Nucleic acids research 49 (18), 10347-10368, 2021 | 10 | 2021 |