Castrense Savojardo
Castrense Savojardo
Ph.D. in Computer Science, Assistant Professor, Department of Pharmacy and Biotechnology, University
Verified email at unibo.it - Homepage
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Year
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
1592019
BUSCA: an integrative web server to predict subcellular localization of proteins
C Savojardo, PL Martelli, P Fariselli, G Profiti, R Casadio
Nucleic acids research 46 (W1), W459-W466, 2018
1402018
INPS-MD: a web server to predict stability of protein variants from sequence and structure
C Savojardo, P Fariselli, PL Martelli, R Casadio
Bioinformatics 32 (16), 2542-2544, 2016
902016
INPS: predicting the impact of non-synonymous variations on protein stability from sequence
P Fariselli, PL Martelli, C Savojardo, R Casadio
Bioinformatics 31 (17), 2816-2821, 2015
772015
DeepSig: deep learning improves signal peptide detection in proteins
C Savojardo, PL Martelli, P Fariselli, R Casadio
Bioinformatics 34 (10), 1690-1696, 2018
622018
BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes
C Savojardo, P Fariselli, R Casadio
Bioinformatics 29 (4), 504-505, 2013
472013
Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization
C Savojardo, P Fariselli, M Alhamdoosh, PL Martelli, A Pierleoni, ...
Bioinformatics 27 (16), 2224-2230, 2011
412011
TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs
C Savojardo, PL Martelli, P Fariselli, R Casadio
Bioinformatics 30 (20), 2973-2974, 2014
402014
eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes
G Babbi, PL Martelli, G Profiti, S Bovo, C Savojardo, R Casadio
BMC genomics 18 (5), 25-34, 2017
352017
MemPype: a pipeline for the annotation of eukaryotic membrane proteins
A Pierleoni, V Indio, C Savojardo, P Fariselli, PL Martelli, R Casadio
Nucleic acids research 39 (suppl_2), W375-W380, 2011
342011
BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming
C Savojardo, P Fariselli, PL Martelli, R Casadio
Bioinformatics 29 (24), 3151-3157, 2013
322013
DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks
C Savojardo, N Bruciaferri, G Tartari, PL Martelli, R Casadio
Bioinformatics 36 (1), 56-64, 2020
312020
TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins
C Savojardo, PL Martelli, P Fariselli, R Casadio
Bioinformatics 31 (20), 3269-3275, 2015
262015
Grammatical-restrained hidden conditional random fields for bioinformatics applications
P Fariselli, C Savojardo, PL Martelli, R Casadio
Algorithms for Molecular Biology 4 (1), 1-10, 2009
232009
On the biases in predictions of protein stability changes upon variations: the INPS test case
L Montanucci, C Savojardo, PL Martelli, R Casadio, P Fariselli
Bioinformatics 35 (14), 2525-2527, 2019
222019
ISPRED4: interaction sites PREDiction in protein structures with a refining grammar model
C Savojardo, P Fariselli, PL Martelli, R Casadio
Bioinformatics 33 (11), 1656-1663, 2017
222017
Large scale analysis of protein stability in OMIM disease related human protein variants
PL Martelli, P Fariselli, C Savojardo, G Babbi, F Aggazio, R Casadio
BMC genomics 17 (2), 239-247, 2016
222016
The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields
V Indio, PL Martelli, C Savojardo, P Fariselli, R Casadio
Bioinformatics 29 (8), 981-988, 2013
222013
Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines
C Savojardo, P Fariselli, R Casadio
Bioinformatics 27 (22), 3123-3128, 2011
212011
SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments
C Savojardo, PL Martelli, P Fariselli, R Casadio
Bioinformatics 33 (3), 347-353, 2017
172017
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Articles 1–20