| Unraveling the processes shaping mammalian gut microbiomes over evolutionary time M Groussin, F Mazel, JG Sanders, CS Smillie, S Lavergne, W Thuiller, ... Nature Communications 8 (1), 14319, 2017 | 302 | 2017 |
| Adaptive evolution within gut microbiomes of healthy people S Zhao, TD Lieberman, M Poyet, KM Kauffman, SM Gibbons, M Groussin, ... Cell host & microbe 25 (5), 656-667. e8, 2019 | 226 | 2019 |
| A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research M Poyet, M Groussin, SM Gibbons, J Avila-Pacheco, X Jiang, SM Kearney, ... Nature medicine 25 (9), 1442-1452, 2019 | 199 | 2019 |
| Bio++: efficient extensible libraries and tools for computational molecular evolution L Guéguen, S Gaillard, B Boussau, M Gouy, M Groussin, NC Rochette, ... Molecular biology and evolution 30 (8), 1745-1750, 2013 | 143 | 2013 |
| An omics-based framework for assessing the health risk of antimicrobial resistance genes AN Zhang, JM Gaston, CL Dai, S Zhao, M Poyet, M Groussin, X Yin, LG Li, ... Nature communications 12 (1), 4765, 2021 | 119 | 2021 |
| Influence of tree shape and evolutionary time‐scale on phylogenetic diversity metrics F Mazel, TJ Davies, L Gallien, J Renaud, M Groussin, T Münkemüller, ... Ecography 39 (10), 913-920, 2016 | 117 | 2016 |
| Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea M Groussin, M Gouy Molecular biology and evolution 28 (9), 2661-2674, 2011 | 106 | 2011 |
| Co-evolution and co-speciation of host-gut bacteria systems M Groussin, F Mazel, EJ Alm Cell Host & Microbe 28 (1), 12-22, 2020 | 95 | 2020 |
| Elevated rates of horizontal gene transfer in the industrialized human microbiome M Groussin, M Poyet, A Sistiaga, SM Kearney, K Moniz, M Noel, J Hooker, ... Cell 184 (8), 2053-2067. e18, 2021 | 94 | 2021 |
| Is host filtering the main driver of phylosymbiosis across the tree of life? F Mazel, KM Davis, A Loudon, WK Kwong, M Groussin, LW Parfrey Msystems 3 (5), e00097-18, 2018 | 84 | 2018 |
| A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences M Groussin, B Boussau, M Gouy Systematic biology 62 (4), 523-538, 2013 | 52 | 2013 |
| Bayesian relaxed clock estimation of divergence times in foraminifera M Groussin, J Pawlowski, Z Yang Molecular phylogenetics and Evolution 61 (1), 157-166, 2011 | 43 | 2011 |
| Gene acquisitions from bacteria at the origins of major archaeal clades are vastly overestimated M Groussin, B Boussau, G Szöllősi, L Eme, M Gouy, C Brochier-Armanet, ... Molecular Biology and Evolution 33 (2), 305-310, 2016 | 40 | 2016 |
| Toward more accurate ancestral protein genotype–phenotype reconstructions with the use of species tree-aware gene trees M Groussin, JK Hobbs, GJ Szöllősi, S Gribaldo, VL Arcus, M Gouy Molecular biology and evolution 32 (1), 13-22, 2015 | 39 | 2015 |
| Ribosomal proteins: toward a next generation standard for prokaryotic systematics? HG Ramulu, M Groussin, E Talla, R Planel, V Daubin, C Brochier-Armanet Molecular phylogenetics and evolution 75, 103-117, 2014 | 36 | 2014 |
| Virus-host coexistence in phytoplankton through the genomic lens S Yau, M Krasovec, LF Benites, S Rombauts, M Groussin, E Vancaester, ... Science Advances 6 (14), eaay2587, 2020 | 28 | 2020 |
| The molecular signal for the adaptation to cold temperature during early life on Earth M Groussin, B Boussau, S Charles, S Blanquart, M Gouy Biology Letters 9 (5), 20130608, 2013 | 24 | 2013 |
| Response of the human gut and saliva microbiome to urbanization in Cameroon A Lokmer, S Aflalo, N Amougou, S Lafosse, A Froment, FE Tabe, M Poyet, ... Scientific reports 10 (1), 2856, 2020 | 23 | 2020 |
| Adaptive evolution within the gut microbiome of individual people S Zhao, TD Lieberman, M Poyet, SM Gibbons, M Groussin, RJ Xavier, ... BioRxiv, 208009, 2017 | 23 | 2017 |
| Reconstructed ancestral enzymes impose a fitness cost upon modern bacteria despite exhibiting favourable biochemical properties JK Hobbs, EJ Prentice, M Groussin, VL Arcus Journal of molecular evolution 81, 110-120, 2015 | 22 | 2015 |
Eric AlmProfessor of Biological Engineering, MITVerified email at mit.edu
