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Yinglong Miao
Yinglong Miao
Computational Medicine and Pharmacology, University of North Carolina - Chapel Hill
Verified email at med.unc.edu - Homepage
Title
Cited by
Cited by
Year
Amber 2021
DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ...
University of California, San Francisco, 2021
46322021
Gaussian accelerated molecular dynamics: Unconstrained enhanced sampling and free energy calculation
Y Miao, VA Feher, JA McCammon
Journal of chemical theory and computation 11 (8), 3584-3595, 2015
5272015
Amber 2015 (University of California, San Francisco)
DA Case, IY Ben-Shalom, SR Brozell, DS Cerutti, TE Cheatham III, ...
Google Scholar There is no corresponding record for this reference, 2015
4212015
Ensemble docking in drug discovery
RE Amaro, J Baudry, J Chodera, Í Demir, JA McCammon, Y Miao, ...
Biophysical journal 114 (10), 2271-2278, 2018
3652018
Improved reweighting of accelerated molecular dynamics simulations for free energy calculation
Y Miao, W Sinko, L Pierce, D Bucher, RC Walker, JA McCammon
Journal of chemical theory and computation 10 (7), 2677-2689, 2014
3492014
Activation and dynamic network of the M2 muscarinic receptor
Y Miao, SE Nichols, PM Gasper, VT Metzger, JA McCammon
Proceedings of the National Academy of Sciences 110 (27), 10982-10987, 2013
2382013
Accelerated molecular dynamics simulations of protein folding
Y Miao, F Feixas, C Eun, JA McCammon
Journal of computational chemistry 36 (20), 1536-1549, 2015
1582015
CRISPR-Cas9 conformational activation as elucidated from enhanced molecular simulations
G Palermo, Y Miao, RC Walker, M Jinek, JA McCammon
Proceedings of the National Academy of Sciences 114 (28), 7260-7265, 2017
1442017
Unconstrained enhanced sampling for free energy calculations of biomolecules: a review
Y Miao, JA McCammon
Molecular simulation 42 (13), 1046-1055, 2016
1382016
Accelerated molecular dynamics simulations of ligand binding to a muscarinic G-protein-coupled receptor
K Kappel, Y Miao, JA McCammon
Quarterly reviews of biophysics 48 (4), 479-487, 2015
1322015
Graded activation and free energy landscapes of a muscarinic G-protein–coupled receptor
Y Miao, JA McCammon
Proceedings of the National Academy of Sciences 113 (43), 12162-12167, 2016
1232016
Gaussian accelerated molecular dynamics: Principles and applications
J Wang, PR Arantes, A Bhattarai, RV Hsu, S Pawnikar, YM Huang, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 11 (5), e1521, 2021
1122021
Gaussian accelerated molecular dynamics in NAMD
YT Pang, Y Miao, Y Wang, JA McCammon
Journal of chemical theory and computation 13 (1), 9-19, 2017
1102017
Striking plasticity of CRISPR-Cas9 and key role of non-target DNA, as revealed by molecular simulations
G Palermo, Y Miao, RC Walker, M Jinek, JA McCammon
ACS central science 2 (10), 756-763, 2016
1062016
AMBER 2018; 2018
DA Case, IY Ben-Shalom, SR Brozell, DS Cerutti, TE Cheatham III, ...
University of California, San Francisco, 2018
1032018
Population based reweighting of scaled molecular dynamics
W Sinko, Y Miao, CAF de Oliveira, JA McCammon
The Journal of Physical Chemistry B 117 (42), 12759-12768, 2013
1012013
Mechanism of the G-protein mimetic nanobody binding to a muscarinic G-protein-coupled receptor
Y Miao, JA McCammon
Proceedings of the National Academy of Sciences 115 (12), 3036-3041, 2018
962018
Gaussian accelerated molecular dynamics: Theory, implementation, and applications
Y Miao, JA McCammon
Annual reports in computational chemistry 13, 231-278, 2017
942017
G-protein coupled receptors: advances in simulation and drug discovery
Y Miao, JA McCammon
Current opinion in structural biology 41, 83-89, 2016
942016
Ligand Gaussian accelerated molecular dynamics (LiGaMD): Characterization of ligand binding thermodynamics and kinetics
Y Miao, A Bhattarai, J Wang
Journal of chemical theory and computation 16 (9), 5526-5547, 2020
892020
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Articles 1–20