| Molecular analysis of the HIV-1 resistance development: enzymatic activities, crystal structures, and thermodynamics of nelfinavir-resistant HIV protease mutants M Kožíšek, J Bray, P Řezáčová, K Šašková, J Brynda, J Pokorná, ... Journal of molecular biology 374 (4), 1005-1016, 2007 | 105 | 2007 |
| Optimized torsion-angle normal modes reproduce conformational changes more accurately than cartesian modes JK Bray, DR Weiss, M Levitt Biophysical journal 101 (12), 2966-2969, 2011 | 54 | 2011 |
| Bihelix: Towards de novo structure prediction of an ensemble of G‐protein coupled receptor conformations R Abrol, JK Bray, WA Goddard III Proteins: Structure, Function, and Bioinformatics 80 (2), 505-518, 2012 | 52 | 2012 |
| The structure of human serotonin 2c G-protein-coupled receptor bound to agonists and antagonists JK Bray, WA Goddard III Journal of Molecular Graphics and Modelling 27 (1), 66-81, 2008 | 52 | 2008 |
| A theory of protein dynamics to predict NMR relaxation E Caballero-Manrique, JK Bray, WA Deutschman, FW Dahlquist, ... Biophysical Journal 93 (12), 4128-4140, 2007 | 42 | 2007 |
| SuperBiHelix method for predicting the pleiotropic ensemble of G-protein–coupled receptor conformations JK Bray, R Abrol, WA Goddard III, B Trzaskowski, CE Scott Proceedings of the National Academy of Sciences 111 (1), E72-E78, 2014 | 36 | 2014 |
| Structure prediction of G protein-coupled receptors and their ensemble of functionally important conformations R Abrol, AR Griffith, JK Bray, WA Goddard Membrane Protein Structure and Dynamics: Methods and Protocols, 237-254, 2012 | 32 | 2012 |
| Characterizing and predicting the functional and conformational diversity of seven-transmembrane proteins R Abrol, SK Kim, JK Bray, AR Griffith, WA Goddard III Methods 55 (4), 405-414, 2011 | 25 | 2011 |
| Conformational ensemble view of G protein-coupled receptors and the effect of mutations and ligand binding R Abrol, SK Kim, JK Bray, B Trzaskowski, WA Goddard III Methods in enzymology 520, 31-48, 2013 | 22 | 2013 |
| The Development and Application of Computational Methods for the Prediction of G Protein-Coupled Receptor Structures JK Bray California Institute of Technology, 2010 | 1 | 2010 |
| Comparison of Cartesian and torsional normal modes for describing conformational changes in proteins J Bray The BCATS 2010 organizing committee, 50, 2010 | | 2010 |
| Structure Prediction and Ligand Binding in Serotonin 2b & 2c Receptors J Bray, N Vaidehi, WA Goddard III ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 232, 328-328, 2006 | | 2006 |
