| Biopython: freely available Python tools for computational molecular biology and bioinformatics PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ... Bioinformatics 25 (11), 1422, 2009 | 5207 | 2009 |
| The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants PJA Cock, CJ Fields, N Goto, ML Heuer, PM Rice Nucleic acids research 38 (6), 1767-1771, 2010 | 2244 | 2010 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1031 | 2018 |
| Using Tablet for visual exploration of second-generation sequencing data I Milne, G Stephen, M Bayer, PJA Cock, L Pritchard, L Cardle, PD Shaw, ... Briefings in Bioinformatics 14 (2), 193-202, 2013 | 1018 | 2013 |
| Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ... PLoS pathogens 7 (9), e1002219, 2011 | 455 | 2011 |
| Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB‐LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating … F Jupe, K Witek, W Verweij, J Śliwka, L Pritchard, GJ Etherington, ... The Plant Journal 76 (3), 530-544, 2013 | 424 | 2013 |
| Identification and localisation of the NB-LRR gene family within the potato genome F Jupe, L Pritchard, GJ Etherington, K MacKenzie, PJA Cock, F Wright, ... BMC genomics 13, 1-14, 2012 | 350 | 2012 |
| The genome and life-stage specific transcriptomes of Globodera pallidaelucidate key aspects of plant parasitism by a cyst nematode JA Cotton, CJ Lilley, LM Jones, T Kikuchi, AJ Reid, P Thorpe, IJ Tsai, ... Genome biology 15, 1-17, 2014 | 267 | 2014 |
| NCBI BLAST+ integrated into Galaxy PJA Cock, JM Chilton, B Grüning, JE Johnson, N Soranzo Gigascience 4 (1), s13742-015-0080-7, 2015 | 246 | 2015 |
| The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence S Eves-van Den Akker, DR Laetsch, P Thorpe, CJ Lilley, EGJ Danchin, ... Genome biology 17, 1-23, 2016 | 195 | 2016 |
| Bio. Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython E Talevich, BM Invergo, PJA Cock, BA Chapman BMC bioinformatics 13, 1-9, 2012 | 167 | 2012 |
| Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology PJA Cock, BA Grüning, K Paszkiewicz, L Pritchard PeerJ 1, e167, 2013 | 165 | 2013 |
| Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida JT Jones, A Kumar, LA Pylypenko, A Thirugnanasambandam, L Castelli, ... Molecular Plant Pathology 10 (6), 815-828, 2009 | 134 | 2009 |
| Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets P Thorpe, PJA Cock, J Bos BMC genomics 17, 1-18, 2016 | 120 | 2016 |
| Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy M Espada, AC Silva, S Eves van den Akker, PJA Cock, M Mota, JT Jones Molecular plant pathology 17 (2), 286-295, 2016 | 105 | 2016 |
| Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA WJ McGavin, C Mitchell, PJA Cock, KM Wright, SA MacFarlane Journal of General Virology 93 (2), 430-437, 2012 | 105 | 2012 |
| Evolution of prokaryotic two-component system signaling pathways: gene fusions and fissions PJA Cock, DE Whitworth Molecular biology and evolution 24 (11), 2355-2357, 2007 | 88 | 2007 |
| Distinct circular single-stranded DNA viruses exist in different soil types B Reavy, MM Swanson, PJA Cock, L Dawson, TE Freitag, BK Singh, ... Applied and environmental microbiology 81 (12), 3934-3945, 2015 | 83 | 2015 |
| Evolution of prokaryotic two-component systems: insights from comparative genomics DE Whitworth, PJA Cock Amino Acids 37, 459-466, 2009 | 80 | 2009 |
| Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida P Thorpe, S Mantelin, PJA Cock, VC Blok, MC Coke, ... BMC genomics 15, 1-15, 2014 | 76 | 2014 |
Christopher FieldsBioinformatics Roustabout, UIUCVerified email at illinois.edu
