| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Nature 595 (7865), 107-113, 2021 | 625 | 2021 |
| Transcriptional and cellular diversity of the human heart NR Tucker, M Chaffin, SJ Fleming, AW Hall, VA Parsons, KC Bedi Jr, ... Circulation 142 (5), 466-482, 2020 | 353 | 2020 |
| Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender SJ Fleming, MD Chaffin, A Arduini, AD Akkad, E Banks, JC Marioni, ... Nature methods 20 (9), 1323-1335, 2023 | 268* | 2023 |
| Single-nucleus profiling of human dilated and hypertrophic cardiomyopathy M Chaffin, I Papangeli, B Simonson, AD Akkad, MC Hill, A Arduini, ... Nature 608 (7921), 174-180, 2022 | 133 | 2022 |
| Deep learning enables genetic analysis of the human thoracic aorta JP Pirruccello, MD Chaffin, EL Chou, SJ Fleming, H Lin, M Nekoui, ... Nature genetics 54 (1), 40-51, 2022 | 113 | 2022 |
| Thermal motion of DNA in an MspA pore B Lu, S Fleming, T Szalay, J Golovchenko Biophysical journal 109 (7), 1439-1445, 2015 | 25 | 2015 |
| Charge, diffusion, and current fluctuations of single-stranded DNA trapped in an MspA nanopore SJ Fleming, B Lu, JA Golovchenko Biophysical journal 112 (2), 368-375, 2017 | 11 | 2017 |
| A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients Y Pita-Juarez, D Karagkouni, N Kalavros, JC Melms, S Niezen, ... bioRxiv, 2022.10. 27.514070, 2022 | 3 | 2022 |
| Reproducible image-based profiling with Pycytominer E Serrano, SN Chandrasekaran, D Bunten, KI Brewer, J Tomkinson, ... arXiv preprint arXiv:2311.13417, 2023 | 2 | 2023 |
| Deterministic stepping of polymers through a nanopore D Branton, SJ Fleming, JA Golovchenko US Patent 11,035,847, 2021 | 2 | 2021 |
| Probing nanopore-DNA interactions with MspA SJ Fleming Harvard University, 2018 | 2 | 2018 |
| Transcriptional profile of the rat cardiovascular system at single cell resolution A Arduini, SJ Fleming, L Xiao, AW Hall, AD Akkad, MD Chaffin, ... bioRxiv, 2023.11. 14.567085, 2023 | 1 | 2023 |
| Ionic Currents S Fleming Nanopore Sequencing: An Introduction, 17-32, 2019 | 1 | 2019 |
| Robust self-supervised denoising of voltage imaging data using CellMincer B Wang, T Ma, T Chen, T Nguyen, E Crouse, SJ Fleming, AS Walker, ... bioRxiv, 2024 | | 2024 |
| Modeling interpretable correspondence between cell state and perturbation response with CellCap Y Xu, S Fleming, M Tegtmeyer, SA McCarroll, M Babadi bioRxiv, 2024.03. 14.585078, 2024 | | 2024 |
| Two Suggested Student Laboratory Exercises D Branton, S Fleming Nanopore Sequencing: An Introduction, 159-181, 2019 | | 2019 |
| Research briefing S Fleming, M Babadi | | |
