Benjamin Bolduc
Benjamin Bolduc
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Healthy human gut phageome
P Manrique, B Bolduc, ST Walk, J van der Oost, WM de Vos, MJ Young
Proceedings of the National Academy of Sciences 113 (37), 10400-10405, 2016
Marine DNA viral macro-and microdiversity from pole to pole
AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ...
Cell 177 (5), 1109-1123. e14, 2019
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
H Bin Jang, B Bolduc, O Zablocki, JH Kuhn, S Roux, EM Adriaenssens, ...
Nature biotechnology 37 (6), 632-639, 2019
Host-linked soil viral ecology along a permafrost thaw gradient
JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ...
Nature microbiology 3 (8), 870-880, 2018
The gut virome database reveals age-dependent patterns of virome diversity in the human gut
AC Gregory, O Zablocki, AA Zayed, A Howell, B Bolduc, MB Sullivan
Cell host & microbe 28 (5), 724-740. e8, 2020
vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria
B Bolduc, HB Jang, G Doulcier, ZQ You, S Roux, MB Sullivan
PeerJ 5, e3243, 2017
DRAM for distilling microbial metabolism to automate the curation of microbiome function
M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ...
Nucleic acids research 48 (16), 8883-8900, 2020
Soil viruses are underexplored players in ecosystem carbon processing
G Trubl, HB Jang, S Roux, JB Emerson, N Solonenko, DR Vik, L Solden, ...
MSystems 3 (5), e00076-18, 2018
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ...
Microbiome 9 (1), 1-13, 2021
Single-virus genomics reveals hidden cosmopolitan and abundant viruses
F Martinez-Hernandez, O Fornas, M Lluesma Gomez, B Bolduc, ...
Nature communications 8 (1), 1-13, 2017
Identification of novel positive-strand RNA viruses by metagenomic analysis of archaea-dominated Yellowstone hot springs
B Bolduc, DP Shaughnessy, YI Wolf, EV Koonin, FF Roberto, M Young
Journal of virology 86 (10), 5562-5573, 2012
iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure
B Bolduc, K Youens-Clark, S Roux, BL Hurwitz, MB Sullivan
The ISME journal 11 (1), 7-14, 2017
Comparative metagenomics of eight geographically remote terrestrial hot springs
P Menzel, SR Gudbergsdóttir, AG Rike, L Lin, Q Zhang, P Contursi, ...
Microbial ecology 70 (2), 411-424, 2015
Discovery of several thousand highly diverse circular DNA viruses
MJ Tisza, DV Pastrana, NL Welch, B Stewart, A Peretti, GJ Starrett, ...
Elife 9, e51971, 2020
A target-unrelated peptide in an M13 phage display library traced to an advantageous mutation in the gene II ribosome-binding site
LA Brammer, B Bolduc, JL Kass, KM Felice, CJ Noren, MF Hall
Analytical biochemistry 373 (1), 88-98, 2008
Archaeal viruses: diversity, replication, and structure
N Dellas, JC Snyder, B Bolduc, MJ Young
Annu Rev Virol 1 (1), 399-426, 2014
Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis
B Bolduc, JF Wirth, A Mazurie, MJ Young
The ISME journal 9 (10), 2162-2177, 2015
Putative archaeal viruses from the mesopelagic ocean
DR Vik, S Roux, JR Brum, B Bolduc, JB Emerson, CC Padilla, FJ Stewart, ...
PeerJ 5, e3428, 2017
40 years of archaeal virology: expanding viral diversity
JC Snyder, B Bolduc, MJ Young
Virology 479, 369-378, 2015
Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
G Trubl, S Roux, N Solonenko, YF Li, B Bolduc, J Rodríguez-Ramos, ...
PeerJ 7, e7265, 2019
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