| Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021 | 1462 | 2021 |
| Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022 | 1417 | 2022 |
| Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... medrxiv, 2020.12. 21.20248640, 2020 | 1197 | 2020 |
| Early assessment of the clinical severity of the SARS-CoV-2 omicron variant in South Africa: a data linkage study N Wolter, W Jassat, S Walaza, R Welch, H Moultrie, M Groome, ... The Lancet 399 (10323), 437-446, 2022 | 1031 | 2022 |
| Sixteen novel lineages of SARS-CoV-2 in South Africa H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ... Nature medicine 27 (3), 440-446, 2021 | 362 | 2021 |
| Kosakovsky Pond SL, Weaver S, Martin D, Lessells RJ, Bhiman JN, Williamson C, de Oliveira T. Detection of a SARS-CoV-2 variant of concern in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021 | 214 | 2021 |
| Outbreak of Listeria monocytogenes in South Africa, 2017–2018: Laboratory Activities and Experiences Associated with Whole-Genome Sequencing Analysis of … AM Smith, NP Tau, SL Smouse, M Allam, A Ismail, NR Ramalwa, ... Foodborne pathogens and disease 16 (7), 524-530, 2019 | 205 | 2019 |
| Outbreak of listeriosis in South Africa associated with processed meat J Thomas, N Govender, KM McCarthy, LK Erasmus, TJ Doyle, M Allam, ... New England Journal of Medicine 382 (7), 632-643, 2020 | 193 | 2020 |
| A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ... Science 374 (6566), 423-431, 2021 | 187 | 2021 |
| Emergence of a SARS-CoV-2 variant of concern with mutations in spike glycoprotein H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021 | 146 | 2021 |
| Ability to develop broadly neutralizing HIV-1 antibodies is not restricted by the germline Ig gene repertoire C Scheepers, RK Shrestha, BE Lambson, KJL Jackson, IA Wright, ... The Journal of Immunology 194 (9), 4371-4378, 2015 | 91 | 2015 |
| The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ... Science 378 (6615), eabq5358, 2022 | 90 | 2022 |
| HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler, ... Cell host & microbe 29 (7), 1093-1110, 2021 | 84 | 2021 |
| Kosakovsky Pond SL R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Kraemer MUG, Kuate-Lere L, Laguda-Akingba O, Lesetedi-Mafoko O, Lessells RJ …, 2022 | 77 | 2022 |
| Clinical severity of SARS-CoV-2 Omicron BA. 4 and BA. 5 lineages compared to BA. 1 and Delta in South Africa N Wolter, W Jassat, S Walaza, R Welch, H Moultrie, MJ Groome, ... Nature communications 13 (1), 5860, 2022 | 73 | 2022 |
| Genome sequencing of extended-spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae isolated from pigs and abattoir workers in Cameroon LL Founou, RC Founou, M Allam, A Ismail, CF Djoko, SY Essack Frontiers in microbiology 9, 331706, 2018 | 56 | 2018 |
| Whole-genome sequences of Listeria monocytogenes sequence type 6 isolates associated with a large foodborne outbreak in South Africa, 2017 to 2018 M Allam, N Tau, SL Smouse, PS Mtshali, F Mnyameni, ZTH Khumalo, ... Genome announcements 6 (25), 10.1128/genomea. 00538-18, 2018 | 54 | 2018 |
| Rapid replacement of the Beta variant by the Delta variant in South Africa H Tegally, E Wilkinson, CL Althaus, M Giovanetti, JE San, J Giandhari, ... MedRxiv, 2021.09. 23.21264018, 2021 | 53 | 2021 |
| Whole Genome Sequencing of Extended Spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae Isolated from Hospitalized Patients in KwaZulu-Natal … RC Founou, LL Founou, M Allam, A Ismail, SY Essack Scientific reports 9 (1), 6266, 2019 | 52 | 2019 |
| In Vitro Antifungal Resistance of Candida auris Isolates from Bloodstream Infections, South Africa TG Maphanga, SD Naicker, S Kwenda, JF Muñoz, E van Schalkwyk, ... Antimicrobial agents and chemotherapy 65 (9), 10.1128/aac. 00517-21, 2021 | 46 | 2021 |
