Istvan Simon

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Dosztanyi ZsuzsannaEötvös Loránd UniversityVerified email at ttk.elte.hu
Gábor E. TusnádyInstitute of Enzymology, RCNSVerified email at ttk.mta.hu
MONIKA FUXREITERprofessor, University of Padova, University of DebrecenVerified email at unipd.it
Peter TompaPofessor of biochemistry, VIB SBRC, BrusselsVerified email at vub.ac.be
Bálint MészárosEMBL HeidelbergVerified email at embl.de
Andras FiserAlbert Einstein College of MedicineVerified email at fiserlab.org
Veronika CsizmókGenome Sciences CentreVerified email at bcgsc.ca
A. Keith DunkerProfessor of Biochemistry,Indiana University School of MedicineVerified email at iupui.edu
Vladimir UverskyProfessor, USFVerified email at usf.edu
Erzsébet FichóHead of Bioinformatics at Cytocast | Operational Product Owner at Ericsson HungaryVerified email at cytocast.com
varadi ahung* acad* sci* OR cornell OR eotvos OR res* center nat* sci*Verified email at enzim.hu
M. Michael GromihaIndian Institute of Technology MadrasVerified email at iitm.ac.in
Agnes Toth-PetroczyMPI of Molecular Cell Biology and Genetics and Center for Systems Biology DresdenVerified email at mpi-cbg.de
Gunnar von HeijneStockholm UniversityVerified email at dbb.su.se
Arne ElofssonScience for Life Laboratory and department of Biochemistry and Biophysics, Stockholm UniversityVerified email at bioinfo.se
Eva RajnavolgyiUniversity of Debrecen Medical and Health Science Centre Department of ImmunologyVerified email at med.unideb.hu
Letif MonesResearcher, Invenia LabsVerified email at invenialabs.co.uk
Sandor PongorProfessor of Bioinformatics, Pázmány UniversityVerified email at itk.ppke.hu
Christopher J OldfieldVirginia Commonwealth UniversityVerified email at vcu.edu
Tamas AranyiRCNSVerified email at ttk.hu

Istvan Simon

Institute of Enzymology, RCNS, Hungarian Academy of Sciences, Budapest HUNGARY

Verified email at enzim.hu

molecular biophysics protein bioinformatics structure prediction transmembrane proteins intrinsically disordered proteins


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The HMMTOP transmembrane topology prediction server GE Tusnady, I Simon Bioinformatics 17 (9), 849-850, 2001	2099	2001
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content Z Dosztányi, V Csizmok, P Tompa, I Simon Bioinformatics 21 (16), 3433-3434, 2005	2068	2005
Principles governing amino acid composition of integral membrane proteins: application to topology prediction GE Tusnady, I Simon Journal of molecular biology 283 (2), 489-506, 1998	1325	1998
Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method. M Cserzö, E Wallin, I Simon, G von Heijne, A Elofsson Protein engineering 10 (6), 673-676, 1997	1305	1997
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins Z Dosztanyi, V Csizmok, P Tompa, I Simon Journal of molecular biology 347 (4), 827-839, 2005	999	2005
ANCHOR: web server for predicting protein binding regions in disordered proteins Z Dosztányi, B Mészáros, I Simon Bioinformatics 25 (20), 2745-2746, 2009	565	2009
Preformed structural elements feature in partner recognition by intrinsically unstructured proteins M Fuxreiter, I Simon, P Friedrich, P Tompa Journal of molecular biology 338 (5), 1015-1026, 2004	562	2004
Prediction of protein binding regions in disordered proteins B Mészáros, I Simon, Z Dosztányi PLoS computational biology 5 (5), e1000376, 2009	555	2009
PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria JL Gardy, C Spencer, K Wang, M Ester, GE Tusnady, I Simon, S Hua, ... Nucleic acids research 31 (13), 3613-3617, 2003	522	2003
Local structural disorder imparts plasticity on linear motifs M Fuxreiter, P Tompa, I Simon Bioinformatics 23 (8), 950-956, 2007	452	2007
Hydrogen exchange and the dynamic structure of proteins C Woodward, I Simon, E Tüchsen Molecular and cellular biochemistry 48 (3), 135-160, 1982	406	1982
Disorder and sequence repeats in hub proteins and their implications for network evolution. Z Dosztányi, J Chen, AK Dunker, I Simon, P Tompa J. Proteome Res 5, 2985, 2006	347	2006
PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank GE Tusnády, Z Dosztányi, I Simon Nucleic acids research 33 (suppl 1), D275-D278, 2005	331	2005
Molecular principles of the interactions of disordered proteins B Mészáros, P Tompa, I Simon, Z Dosztányi Journal of molecular biology 372 (2), 549-561, 2007	291	2007
Transmembrane proteins in the Protein Data Bank: identification and classification GE Tusnády, Z Dosztányi, I Simon Bioinformatics 20 (17), 2964-2972, 2004	274	2004
PDBTM: Protein Data Bank of transmembrane proteins after 8 years D Kozma, I Simon, GE Tusnady Nucleic acids research 41 (D1), D524-D529, 2013	253	2013
Close encounters of the third kind: disordered domains and the interactions of proteins P Tompa, M Fuxreiter, CJ Oldfield, I Simon, AK Dunker, VN Uversky Bioessays 31 (3), 328-335, 2009	245	2009
Malleable machines take shape in eukaryotic transcriptional regulation M Fuxreiter, P Tompa, I Simon, VN Uversky, JC Hansen, FJ Asturias Nature chemical biology 4 (12), 728-737, 2008	208	2008
BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes GE Tusnady, I Simon, A Varadi, T Aranyi Nucleic acids research 33 (1), e9-e9, 2005	202	2005
Stabilization centers in proteins: identification, characterization and predictions Z Dosztányi, A Fiser, I Simon Journal of molecular biology 272 (4), 597-612, 1997	180	1997

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