Pooya Zakeri
Pooya Zakeri
Scientist @ VIB-KU Leuven Center for Brain & Disease Research
Verified email at esat.kuleuven.be
Title
Cited by
Cited by
Year
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D'Andrea, R Lepore, ...
Genome Biology 17 (184), 2016
2932016
Prediction of protein submitochondria locations based on data fusion of various features of sequences
P Zakeri, B Moshiri, M Sadeghi
Journal of Theoretical Biology 269 (1), 208-216, 2011
522011
Linking drug target and pathway activation for effective therapy using multi-task learning
M Yang, J Simm, CC Lam, P Zakeri, GJP van Westen, Y Moreau, ...
Scientific reports 8 (1), 1-10, 2018
342018
Macau: Scalable Bayesian factorization with high-dimensional side information using MCMC
J Simm, A Arany, P Zakeri, T Haber, JK Wegner, V Chupakhin, ...
2017 IEEE 27th International Workshop on Machine Learning for Signal…, 2017
322017
Macau: scalable bayesian multi-relational factorization with side information using MCMC
J Simm, A Arany, P Zakeri, T Haber, JK Wegner, V Chupakhin, ...
arXiv preprint arXiv:1509.04610, 2015
272015
Protein fold recognition using geometric kernel data fusion
P Zakeri, B Jeuris, R Vandebril, Y Moreau
Bioinformatics 30 (13), 1850-1857, 2014
272014
Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information
P Zakeri, J Simm, A Arany, S ElShal, Y Moreau
Bioinformatics 34 (13), i447-i456, 2018
222018
Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer
L Cantini, P Zakeri, C Hernandez, A Naldi, D Thieffry, E Remy, A Baudot
Nature communications 12 (1), 1-12, 2021
15*2021
Gene prioritization through geometric-inspired kernel data fusion
P Zakeri, S Elshal, Y Moreau
2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM…, 2015
112015
Highly scalable tensor factorization for prediction of drug-protein interaction type
A Arany, J Simm, P Zakeri, T Haber, JK Wegner, V Chupakhin, ...
arXiv preprint arXiv:1512.00315, 2015
42015
Clinical population genetic analysis of variants in the SARS-CoV-2 receptor ACE2
A Ardeshirdavani, P Zakeri, A Mehrtash, SM Hosseini, G Li, ...
medRxiv, 2020
32020
A comprehensive comparison of two MEDLINE annotators for disease and gene linkage: sometimes less is more
S ElShal, J Simm, A Arany, P Zakeri, J Davis, Y Moreau
International Conference on Bioinformatics and Biomedical Engineering, 765-778, 2016
32016
Competitive exclusion during co-infection as a strategy to prevent the spread of a virus: A computational perspective
S Vafadar, M Shahdoust, A Kalirad, P Zakeri, M Sadeghi
PloS one 16 (2), e0247200, 2021
2021
Author Correction: Linking drug target and pathway activation for effective therapy using multi-task learning
M Yang, J Simm, CC Lam, P Zakeri, GJP van Westen, Y Moreau, ...
Scientific reports 9 (1), 1-1, 2019
2019
Linking drug target and pathway activation for effective therapy using multi-task learning (vol 8, 8322, 2018)
M Yang, J Simm, CC Lam, P Zakeri, GJP van Westen, Y Moreau, ...
Scientific Reports 9 (1), 2019
2019
Machine Learning for Genomic Data Fusion
P Zakeri
2018
Linking drug target and pathway activation for effective precision therapy using multi-task learning
M Yang, J Simm, P Zakeri, Y Moreau, J Saez-Rodriguez
bioRxiv, 225573, 2017
2017
Mining therapeutic insights from large scale drug screenings with transfer learning
M Yang, J Simm, P Zakeri, Y Moreau, J Saez-Rodriguez
bioRxiv, 225573, 2017
2017
Toward a Metric Learning Model for Protein Fold Recognition Using a Novel Feature Extraction Technique Based on the Mixture of Evolutionary and Secondary Structural Information
P Zakeri, F Amini, M Sadeghi, Y Moreau
Proceedings of the 14th Annual Rocky Mountain Bioinformatics Conference, 1-1, 2016
2016
Protein Fold Recognition Using Matrix Factorization Technique
P Zakeri, J Simm, Arany, F Amini, M Sadeghi, Y Moreau
Proceedings of the 15th European Conference on Computational Biology, 1-1, 2016
2016
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Articles 1–20